View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19613_low_1 (Length: 1170)
Name: NF19613_low_1
Description: NF19613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19613_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 14 - 608
Target Start/End: Original strand, 6285635 - 6286237
Alignment:
| Q |
14 |
aatatataaagacatttgtcaacggtattttagttttgggcatttctaacccttaaaagacatcacgatgcaacttatctnnnnnnntatatcaaataat |
113 |
Q |
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| T |
6285635 |
aatatataaagacatttgtcaacggtattttagttttgggcatttctaacccttaaaagacatcacgatgcaacttatctaaaaaaatatatcaaataat |
6285734 |
T |
|
| Q |
114 |
tttataaaaagagttgctacnnnnnnntaattcctactttaaagaaacaatgatgtgaaagttttactaataaaatgaaaagaatgnnnnnnnn-gttgc |
212 |
Q |
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| T |
6285735 |
tttataaaaagagttgctacaaaaaa-taattcctactttaaagaaacaatgatgtgaaagttttactaatagaatgaaaagaatgtttgtttttgttgc |
6285833 |
T |
|
| Q |
213 |
taaattacaatttaggtcccttaagttattcttaagtttcactttgtcctttgagctatttttgttatgttttgaccaaataagcaacaaatgttattca |
312 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6285834 |
taaattacaatttagttcccttaagttattcttaagtttcactttgtcctttgagctatttttgttatgttttgaccaaataagcaacaaatgttattca |
6285933 |
T |
|
| Q |
313 |
tttttgt--------agttagaaaatttgcacagctcttctccaaatgagaaaaagtgtatgtgcatcttgcatgcctgccttctttatgaaaggtggat |
404 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6285934 |
tttttgttagttttaagttagaaaatttgcacagctcttctccaaatgagaaaaagtgtctgtgcatcttgcatgcctgccttctttatgaaaggtggat |
6286033 |
T |
|
| Q |
405 |
aggtgttaaactatcttgcatgtcttcttcattctaaagttannnnnnngtttgtgctcttttaacacaccttttcaatgtaatatttcatattgattat |
504 |
Q |
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| T |
6286034 |
aggtgttaaactatcttgcatgtcttcttcattctaaagttattttttggtttgtgctcttttaactcactttttcaatatatgatttcatattgtttat |
6286133 |
T |
|
| Q |
505 |
atgttaaactatacggaaaatatttagtatatatccaaacacttcatagacatcttgaacgataaaaaataaagagtagtgtaatatatatgatatattg |
604 |
Q |
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||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| || |||||||||||||| ||||||||||| ||||| |||| |
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| T |
6286134 |
atgttaaactatacggaaaatatttagtatacatctaaacacttcatagacatcttgaaagacaaaaaataaagagtggtgtaatatatgtgatagattg |
6286233 |
T |
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| Q |
605 |
gtga |
608 |
Q |
| |
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|||| |
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| T |
6286234 |
gtga |
6286237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 734 - 1154
Target Start/End: Original strand, 6286235 - 6286658
Alignment:
| Q |
734 |
tgaaagagaatgaaaaatgatattgttgtaacaaaaatgaaatattccataccaatatttgcttctccttgaatttatgtaacaaaatagggagtcatta |
833 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6286235 |
tgaaagagaatgaaaaattatattgttgtaacaaaaatgaaatattccataccaatatttgcttctccttgaatttatgtaacaaaatagggagtcatta |
6286334 |
T |
|
| Q |
834 |
tt-gagtttgactataaggcaagcaatgatcatgactcgtaattaatgtcacaagagggtcaacagctagctaggtttgtcattgacattgctcactcct |
932 |
Q |
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|| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6286335 |
tttgagtttgactataaggaaagcaatgatcatgactcgtaattaatgtcacaagggggtcaacagctagctaggtttgtcattgacattgctcactcct |
6286434 |
T |
|
| Q |
933 |
tatatgaatgagtttactctttttcatccaagaggatatccatgaaacttaaaagcattttatgtgacctataggactctaatgagggcacaattagaaa |
1032 |
Q |
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| T |
6286435 |
tatatgaatgagtttactctttttcatccaagaggatatccatgaaacttaaaagcattttatgtgacctataggactctaatgagggcacaattagaaa |
6286534 |
T |
|
| Q |
1033 |
tggtacttcttagagttattattatactctaaaaacattgttggtttgaattgcataaacaatgt--gagtaagtcaacccctaaagtaactagagtcaa |
1130 |
Q |
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| T |
6286535 |
tggtacttcttagagttattattatactctaaaaacattgttggtttgaattgcataaacaatgtgagagtaagtcaacccctaaagtaactagagtcaa |
6286634 |
T |
|
| Q |
1131 |
aatgagagggtcctgcatctatgt |
1154 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
6286635 |
aatgagagggtcctgcatctatgt |
6286658 |
T |
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