View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19613_low_12 (Length: 444)
Name: NF19613_low_12
Description: NF19613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19613_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 9 - 427
Target Start/End: Original strand, 41427859 - 41428278
Alignment:
| Q |
9 |
gataattctgaaattgcttatgattcacctaactgtgactttatagaattattatactgtactaattttgtgcaaatgcttctacctcatgggttttgct |
108 |
Q |
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| T |
41427859 |
gataattctgaaattgcttatgattcacctaactgtggctttatagaattattatactgtactaattttgtgcaaatgcttctacctcatgggttttgct |
41427958 |
T |
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| Q |
109 |
ttgcagaattannnnnnncaatcgttttacaagttaaaaactaaatcattttgcatccaaactattttaattttgtggatggtactcacatgcatttgca |
208 |
Q |
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| T |
41427959 |
ttgcagaattatttttttcaatcgttttacaagttaaaaactaaatcattttgcatccaaactattttaattttgtggatggtactcacatgcatttgca |
41428058 |
T |
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| Q |
209 |
tggtacannnnnnn-acagggaacaagttggtgggatgaagaaataaatgggcatgtagtggattcttctattggtctgggcatgataagcgagcagaaa |
307 |
Q |
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| T |
41428059 |
tggtacattttttttacagggaacaagttggtgggatgaagaaataaatgggcatgtagtggattcttctattgggctgggcatgataagcgagcagaaa |
41428158 |
T |
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| Q |
308 |
gggatattgggccctggcccagcagaactacgattcccagaagcactttgatatggctgttttaatcaagatataggtttagctattttcattggcttaa |
407 |
Q |
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| T |
41428159 |
gggatattgggccctggcccagcagaactacgattcccagaagcactttgatatggctgttttaatcaagatataggtttagctattttcattggcttaa |
41428258 |
T |
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| Q |
408 |
tgctgttaatattttacttg |
427 |
Q |
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| T |
41428259 |
tgctgttaatattttacttg |
41428278 |
T |
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