View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19613_low_14 (Length: 427)
Name: NF19613_low_14
Description: NF19613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19613_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 4e-94; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 240 - 414
Target Start/End: Original strand, 6374954 - 6375128
Alignment:
| Q |
240 |
gacaccttattcctcaaggttctgttgaagtgagataacagtgaaaagacactgaattgggttgatcattgtgacaaggcgaggaaccagaaggaggaac |
339 |
Q |
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| T |
6374954 |
gacaccttattcctcaaggttctgttgaagtgagataacagtgaaaagacactgaattgggttgatcattgtgacaaggcgaggaaccagaaggaggaac |
6375053 |
T |
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| Q |
340 |
aaaaccctttggaagcataaccgaaaaaggtcgtgagttcaccatgttcttgacaatcttcttcttgtgtttcct |
414 |
Q |
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| T |
6375054 |
aaaaccctttggaagcataaccgaaaaaggtcgtgagttcaccatgttcttgacaatcttcttcttgtgtttcct |
6375128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 103 - 221
Target Start/End: Original strand, 6374806 - 6374924
Alignment:
| Q |
103 |
caatagtgtcatcaaggaagtgatacactacaattaatgcaagaaggattaagacacaagcaataaccaaatttggaaaactttctttgctcatctttca |
202 |
Q |
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| T |
6374806 |
caatagtgtcatcaaggaagtgatacactacaattaatgcaagaaggattaagacacaagcaataaccaaatttggaaaactttctttgctcatctttca |
6374905 |
T |
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| Q |
203 |
ctgtaaattgcttaaatac |
221 |
Q |
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| T |
6374906 |
ctgtaaattgcttaaatac |
6374924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 6374720 - 6374770
Alignment:
| Q |
17 |
actataagtgtttttaatctcttaaatcttattgttctctattacaacatc |
67 |
Q |
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| T |
6374720 |
actataagtgtttttaatctcttaaatcttattgttctctattacagcatc |
6374770 |
T |
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