View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19613_low_17 (Length: 359)
Name: NF19613_low_17
Description: NF19613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19613_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 2015932 - 2016274
Alignment:
| Q |
1 |
ataataaaattgtttgaaattataatgttatgaatgcatcaataatagaatgtgttgtactcactcattgcaatgatcattatgatctcttttcttgatt |
100 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2015932 |
ataataaaattgtttgacattatcatgttatgaatgcatcaataatagaatgtgttgtactcactcattgcaatgatcattatgatctcttttcttgatt |
2016031 |
T |
|
| Q |
101 |
tggtattggattttggactgcattttgttccattcatcttcccgtttccctcatattctcccagacataaacactggtagcttccaggaagattggtgca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
2016032 |
tggtattggattttggactgcattttgttccattcatcttcccgtttccctcatattctgccggacataaacactggtagcttccaggaagattggtgca |
2016131 |
T |
|
| Q |
201 |
tgttgcttcctcaacacagtcattggactccatacattcattaatatctaaaggataatttgttagttttgatttctgttttcacaatggacaaatttag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2016132 |
tgttgcttcctcaacacagtcattggactccatacattcattaatatctaaaggataatttgttagttttgatttctgttttcacaatggacaaatttag |
2016231 |
T |
|
| Q |
301 |
ttttctaagaacaatagttactgttatggattacagtaacctg |
343 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2016232 |
ttttctaagaacaatagttactgttatggattacagtaacctg |
2016274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 26 - 291
Target Start/End: Complemental strand, 40567798 - 40567530
Alignment:
| Q |
26 |
tgttatgaatgcatcaataatagaatg---tgttgtactcactcattgcaatgatcattatgatctcttttcttgatttggtattggattttggactgca |
122 |
Q |
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| T |
40567798 |
tgttatgaatgaatccagaatagagtgtgttgttgtactcactcaatgaaatgatcaatataatctctttcctttgtttggtactggattttgaactgca |
40567699 |
T |
|
| Q |
123 |
ttttgttccattcatcttcccgtttccctcatattctcccagacataaacactggtagcttccaggaagattggtgcatgttgcttcctcaacacagtca |
222 |
Q |
| |
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| |||||||||| | ||||||| ||| |||||| || || | |||||||| || ||||||||||||| ||| |||||||||| | |||||||| | |
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| T |
40567698 |
tcttgttccattacttttcccgtctccttcatatccttccgggcataaacagtgatagcttccaggaaagttgatgcatgttgccccatcaacacaattg |
40567599 |
T |
|
| Q |
223 |
ttggactccatacattcattaatatctaaaggataatttgttagttttgatttctgttttcacaatgga |
291 |
Q |
| |
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| T |
40567598 |
ttggattccatgcattcattaatatctagagaataatttgtcagtttcgatttctgttttcacaatgga |
40567530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 109 - 270
Target Start/End: Complemental strand, 40590705 - 40590544
Alignment:
| Q |
109 |
gattttggactgcattttgttccattcatcttcccgtttccctcatattctcccagacataaacactggtagcttccaggaagattggtgcatgttgctt |
208 |
Q |
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||||||||| |||||||||| ||||||||||| |||| |||||||| | || | | |||||||| ||||||||||||||||||||| ||||||||| | |
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| T |
40590705 |
gattttggattgcattttgtgccattcatctttccgtctccctcatgtcctttcgggcataaacaatggtagcttccaggaagattgtcgcatgttgcct |
40590606 |
T |
|
| Q |
209 |
cctcaacacagtcattggactccatacattcattaatatctaaaggataatttgttagtttt |
270 |
Q |
| |
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| | |||||||||||| |||||| | ||||||||||||||||||| ||||||||| |||||| |
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| T |
40590605 |
cttgaacacagtcattagactccgtgcattcattaatatctaaagaataatttgtcagtttt |
40590544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 44 - 269
Target Start/End: Complemental strand, 40572364 - 40572139
Alignment:
| Q |
44 |
aatagaatgtgttgtactcactcattgcaatgatcattatgatctcttttcttgatttggtattggattttggactgcattttgttccattcatcttccc |
143 |
Q |
| |
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||||||| |||||||||||||||| ||| || | | ||||| ||||| |||||||||||| ||||||||||||||||| ||||||||| | ||||| |
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| T |
40572364 |
aatagaacgtgttgtactcactcaatgcgatagttaacatgatatctttccttgatttggtactggattttggactgcatcctgttccattatttttccc |
40572265 |
T |
|
| Q |
144 |
gtttccctcatattctcccagacataaacactggtagcttccaggaagattggtgcatgttgcttcctcaacacagtcattggactccatacattcatta |
243 |
Q |
| |
|
|| |||||||||| || | | |||||||| |||||||| |||||||||| | |||||||||| ||||||||||| |||||| ||||| ||||||||| |
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| T |
40572264 |
gtctccctcatatccttctgggcataaacaatggtagctcccaggaagatcgatgcatgttgcctcctcaacacaatcattgtgctccaagcattcatta |
40572165 |
T |
|
| Q |
244 |
atatctaaaggataatttgttagttt |
269 |
Q |
| |
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||||| ||||||| ||| ||||| |
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| T |
40572164 |
tattctaagggataatatgtcagttt |
40572139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 94 - 289
Target Start/End: Complemental strand, 40601308 - 40601113
Alignment:
| Q |
94 |
cttgatttggtattggattttggactgcattttgttccattcatcttcccgtttccctcatattctcccagacataaacactggtagcttccaggaagat |
193 |
Q |
| |
|
|||||||||||| |||| || ||||||||| ||||||||| | ||||||| |||||||||| || | | ||| |||| ||||||||||| ||| ||| |
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|
| T |
40601308 |
cttgatttggtactggagttcggactgcatcctgttccattatttttcccgtctccctcatatccttctgggcatgaacaatggtagcttccgggatgat |
40601209 |
T |
|
| Q |
194 |
tggtgcatgttgcttcctcaacacagtcattggactccatacattcattaatatctaaaggataatttgttagttttgatttctgttttcacaatg |
289 |
Q |
| |
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|| ||||| | || ||||||||||||| |||||| ||||| || ||||||| |||||||||||||| ||| ||||| |||| ||||||||||||| |
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| T |
40601208 |
tgatgcatctcgcctcctcaacacagtaattggattccatgcaatcattaacatctaaaggataatatgtcagtttcaatttttgttttcacaatg |
40601113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 44 - 269
Target Start/End: Complemental strand, 40578805 - 40578592
Alignment:
| Q |
44 |
aatagaatgtgttgtactcactcattgcaatgatcattatgatctcttttcttgatttggtattggattttggactgcattttgttccattcatcttccc |
143 |
Q |
| |
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||||||| |||||||||||||||| ||||||||| | ||||||||||| |||||||||||| ||||||||||||||||| || || || |
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| T |
40578805 |
aatagaacgtgttgtactcactcagtgcaatgattaacatgatctctttacttgatttggtactggattttggactgcatctt------------tttcc |
40578718 |
T |
|
| Q |
144 |
gtttccctcatattctcccagacataaacactggtagcttccaggaagattggtgcatgttgcttcctcaacacagtcattggactccatacattcatta |
243 |
Q |
| |
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|| ||| |||||| || | |||||||| ||||||||||||||||||||| ||||||| || |||||| ||||| |||||| ||| | ||||||| | |
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|
| T |
40578717 |
gtctccttcatatccttttgggcataaacaatggtagcttccaggaagattgatgcatgtcgccccctcaaaacagtaattggattccttgcattcatca |
40578618 |
T |
|
| Q |
244 |
atatctaaaggataatttgttagttt |
269 |
Q |
| |
|
| |||||||| ||| ||||| ||||| |
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| T |
40578617 |
acatctaaagtatattttgtcagttt |
40578592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 253
Target Start/End: Complemental strand, 40596942 - 40596745
Alignment:
| Q |
44 |
aatagaatgtgttgtactcactcattgcaatgatcattatgatctcttttcttgatttggtattggattttggactgcattttgttccattcatcttccc |
143 |
Q |
| |
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||||||||| |||||||||||||| |||| ||| || |||| |||||| |||||||||||| |||||||| |||||||| || |||| |
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|
| T |
40596942 |
aatagaatgcgttgtactcactcaatgcagtgaccaatatgtactctttccttgatttggtaatggatttttgactgcatctttttcc------------ |
40596855 |
T |
|
| Q |
144 |
gtttccctcatattctcccagacataaacactggtagcttccaggaagattggtgcatgttgcttcctcaacacagtcattggactccatacattcatta |
243 |
Q |
| |
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|| ||| |||||| || | |||||||| ||||| ||||||||||||||||||||||| || ||| || |||||||||||| ||| | ||||||| | |
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|
| T |
40596854 |
gtctccttcatatccttttgggcataaacaatggtaacttccaggaagattggtgcatgtcgcccccttaaaacagtcattggattccttgcattcatca |
40596755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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