View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19613_low_2 (Length: 698)
Name: NF19613_low_2
Description: NF19613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19613_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 278 - 680
Target Start/End: Original strand, 33551915 - 33552322
Alignment:
| Q |
278 |
atataaactgaattaaactcgatgtatacctattaattaaaccaaaaggaaactaatgtattgacaccaaattaataata------tttaagttaaaaga |
371 |
Q |
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| T |
33551915 |
atataaactgaattaacctctatgtatgcctattaattaaactaaaagtaaactaatgtattgacaccaaattaataatactccatttaaagttaaaaga |
33552014 |
T |
|
| Q |
372 |
atgcgttcaacactatgaagcgtaaccaaaaagccgtgaatatttatgtgccatttgtcacttctccagcatctttttgtgtcctctgccgttcacaatt |
471 |
Q |
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| T |
33552015 |
atgcgttcaacactgtgaagcgtaaccaaaaagccgtgaatatttatgtgccatttgtcatttctccagcatctttttatgtcctctgccgttcacaatt |
33552114 |
T |
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| Q |
472 |
attttatttattcttctattgttcccattttcaacnnnnnnngtacatgaatcaaagttataaatctttgtagagtatcaagaacagatatgagtatatt |
571 |
Q |
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| T |
33552115 |
a-tttatttattcttctattgttcccattttcaactttttttgtacatgaatcaaagttataaatctttgtagagtatcaagaacagatatgagtatatt |
33552213 |
T |
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| Q |
572 |
agagtaagaaacaagttcatattaatnnnnnnnnnnnnnnnnnnnctacaccctagggaccgagtcatctcccaatagttgacactaacttacaaactta |
671 |
Q |
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| T |
33552214 |
agagtaagaaacaagttcatattaattaaaaataataataataaactacaccctagggaccgagtcatctcccaatagttgacactaacttacaaactta |
33552313 |
T |
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| Q |
672 |
agaataccc |
680 |
Q |
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| T |
33552314 |
agaataccc |
33552322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 4 - 284
Target Start/End: Original strand, 33551574 - 33551849
Alignment:
| Q |
4 |
atatatcatatatgtataaataaataaaaattataatcaagaagaaaaccacgcttacacaagtccctcatcttccgaaattgagatgtaccaatagttt |
103 |
Q |
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| T |
33551574 |
atatatcatatatgtataaaaaaata-----tataatcaagaagaaaaccacgcttacacaagtccctcatcttccgaaattgagatgtaccaatagttt |
33551668 |
T |
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| Q |
104 |
tgcaatggaatccaatgatcattttatactctaccaaatcaaaaaagtattatgaaattagttatatgatatagtataataatatttttaattggatgat |
203 |
Q |
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| T |
33551669 |
tgcaatggaatacaatgatcattttatactctaccaaatcaaaaaagtattatgaaattagttatatgatatagtataataatatttttaattggatgat |
33551768 |
T |
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| Q |
204 |
ggtgttgctctattctacgtataatatatgtcctttttctttttcaatcaagaagtttagtgattaaaagtttaatataaa |
284 |
Q |
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| T |
33551769 |
agtgttgatctattctgcgtataatatatgtcatttttcttttccaatcaagtagtttagtgattaaaagtttaacataaa |
33551849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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