View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19613_low_21 (Length: 339)
Name: NF19613_low_21
Description: NF19613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19613_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 327
Target Start/End: Original strand, 19995982 - 19996292
Alignment:
| Q |
17 |
caaaaatggtaactcattagcctcatgtgtttcacctcttgctattttggcccatgagttgatgaatctaatggttcctagtccatctgataaagagtga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
19995982 |
caaaaatggtaactcattagcctcatgtgtttcacctcttgctattttggcccatgtgttgatgaatctaatggctcctagtccatctgataaagagtga |
19996081 |
T |
|
| Q |
117 |
gagcaactaataccaattgcaaggccttcatctttgttttgaaattttgtgagttgaaccataaacaaaggaatatcttccacaggttgattgtaatcaa |
216 |
Q |
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|| ||| ||||| ||||||||| ||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||| |
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| T |
19996082 |
gatcaagcaatactaattgcaagatgttcatctttgttttggaattttgtgagttgaaccagaaacaatggaatatcttccacaggttgactgtaatcaa |
19996181 |
T |
|
| Q |
217 |
ttgttggaacaagctccatggtggagtcagaaggtgaaaagtcaccataatcatgaattgtttttgtggtttcaacttcaagcaaaattgcaccttttgc |
316 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19996182 |
tttttggaacaagctccatggtggagtcagaaggtgaaaagtcaccataatcatgaattgtttttgtggtttcaacttcaagcaaaattgcaccttttgc |
19996281 |
T |
|
| Q |
317 |
attgagattca |
327 |
Q |
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|||| |||||| |
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| T |
19996282 |
attgcgattca |
19996292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 8323771 - 8324080
Alignment:
| Q |
18 |
aaaaatggtaactcattagcctcatgtgtttcacctcttgctattttggcccatgagttgatgaatctaatggttcctagtccatctgataaagagtgag |
117 |
Q |
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||||| ||||||||||| ||||| | ||||| ||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||| ||||| |
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| T |
8323771 |
aaaaagggtaactcatttacctcaagggtttctcctcttgctattttggcccatgagttgatgagtctaatggctccaagtccatctgataaagggtgag |
8323870 |
T |
|
| Q |
118 |
agcaactaataccaattgcaaggccttcatctttgttttgaaattttgtgagttgaaccataaacaaaggaatatcttccacaggttgattgtaatcaat |
217 |
Q |
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| || ||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||| |||||||||||||| || |
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| T |
8323871 |
aataagcaataccaattgcaagaccttcatctttgttttgaaatcttgtgagttgaaccacaaacaatggaatatcttccactggttgattgtaatctat |
8323970 |
T |
|
| Q |
218 |
tgttggaacaagctccatggtggagtcagaaggtgaaaagtcaccataatcatgaattgtttttgtggtttcaacttcaagcaaaattgcaccttttgca |
317 |
Q |
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| T |
8323971 |
tattggaacaagctccatggttgaatcagaaggtgaaaaatcaccataatcatgaattgtttttgtggtttcagcttcaagcaaaatagcaccttttgca |
8324070 |
T |
|
| Q |
318 |
ttgagattca |
327 |
Q |
| |
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|||||||||| |
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| T |
8324071 |
ttgagattca |
8324080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 30 - 327
Target Start/End: Complemental strand, 18273029 - 18272732
Alignment:
| Q |
30 |
tcattagcctcatgtgtttcacctcttgctattttggcccatgagttgatgaatctaatggttcctagtccatctgataaagagtgagagcaactaatac |
129 |
Q |
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||||||| ||| |||||||||||||||| |||||||||||||||||||| || ||| || | |||||||||||| ||||| || ||| | |
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| T |
18273029 |
tcattaggctctagtgtttcacctcttgcaattttggcccatgagttgataaagtcaatacaaccaacaccatctgataaaagatgagaataagcaattc |
18272930 |
T |
|
| Q |
130 |
caattgcaaggccttcatctttgttttgaaattttgtgagttgaaccataaacaaaggaatatcttccacaggttgattgtaatcaattgttggaacaag |
229 |
Q |
| |
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||||||||| || |||||| |||||| ||||| ||||||||||||| | |||||| || || ||||| | |||| |||||||||| | |||||| ||| |
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| T |
18272929 |
caattgcaaagctttcatcattgtttcgaaatcttgtgagttgaacaacaaacaatggcatttcttcaattggtttgttgtaatcaacttttggaataag |
18272830 |
T |
|
| Q |
230 |
ctccatggtggagtcagaaggtgaaaagtcaccataatcatgaattgtttttgtggtttcaacttcaagcaaaattgcaccttttgcattgagattca |
327 |
Q |
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||| |||||||||||||||||| ||||||||||||||||||||| |||||| | ||||| |||| | |||||| || ||||||||||||||||||| |
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| T |
18272829 |
ctctttggtggagtcagaaggtgcaaagtcaccataatcatgaatactttttgagctttcagcttctatcaaaatagctccttttgcattgagattca |
18272732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 179 - 327
Target Start/End: Original strand, 18317783 - 18317931
Alignment:
| Q |
179 |
aaacaaaggaatatcttccacaggttgattgtaatcaattgttggaacaagctccatggtggagtcagaaggtgaaaagtcaccataatcatgaattgtt |
278 |
Q |
| |
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|||||| ||||| ||||| | |||||||| ||||||| | |||||| |||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
18317783 |
aaacaatggaatttcttcaatgggttgattataatcaacttttggaataagctctttggtggagtcagaaggtgaaaagtcaccataatcatgaatactt |
18317882 |
T |
|
| Q |
279 |
tttgtggtttcaacttcaagcaaaattgcaccttttgcattgagattca |
327 |
Q |
| |
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|||||||||||| |||| | ||||| || ||||||||||||||||||| |
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| T |
18317883 |
tttgtggtttcagcttctattaaaatagctccttttgcattgagattca |
18317931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 18317634 - 18317689
Alignment:
| Q |
24 |
ggtaactcattagcctcatgtgtttcacctcttgctattttggcccatgagttgat |
79 |
Q |
| |
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||||| ||||||||||| || ||||||||||||||||||| |||||||||||||| |
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| T |
18317634 |
ggtaattcattagcctctagtctttcacctcttgctattttagcccatgagttgat |
18317689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 3507930 - 3507871
Alignment:
| Q |
159 |
aattttgtgagttgaaccataaacaaaggaatatcttccacaggttgattgtaatcaatt |
218 |
Q |
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| T |
3507930 |
aattttgtgagttgaactatcaacaaagggatttcttccaagggttgagtgtaatcaatt |
3507871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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