View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19613_low_25 (Length: 302)
Name: NF19613_low_25
Description: NF19613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19613_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 14 - 287
Target Start/End: Complemental strand, 1276314 - 1276041
Alignment:
| Q |
14 |
aaatatgaaatgctaattacgttatgattatgatctatgaaggttggctgatattctatacaaggagaaggagctgcgtttgaaaatgaaatcgatggaa |
113 |
Q |
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| T |
1276314 |
aaatatgaaatgctaattacgttatgattatgatatatgaaggttggctgatattctatacaaggagaaggagctgcgtttgaaaatgaaatcgatggaa |
1276215 |
T |
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| Q |
114 |
aaaaggggacagccatttactgcttctactccacccccttcccgtatggttgctatggaataatctccaagtgaatattgctgcaaaattaagtgtttct |
213 |
Q |
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| T |
1276214 |
aaaaggggacagccatttactgcttctactccacccccttcccgtatggttgctatggaataattttcaagtgaatattgctgcaaaattaagtgtttct |
1276115 |
T |
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| Q |
214 |
tgtttgtttgttttcctgtcaaaggtattgagagtctagcttgttagttgtgtgggtgcatgtgattttgtact |
287 |
Q |
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| T |
1276114 |
tgtttgtttgttttcctgtcaaaggtattgagagtctagcttgttagttgtgtgggtgcatgtgattttgtact |
1276041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 1220080 - 1220014
Alignment:
| Q |
51 |
tgaaggttggctgatattctatacaaggagaaggagctgcgtttgaaaatgaaatcgatggaaaaaa |
117 |
Q |
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| T |
1220080 |
tgaaggttggctgaaactctatacaatgaaaagcagctgcgtttgaaaaggaaatcgatggaaaaaa |
1220014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 1241449 - 1241381
Alignment:
| Q |
49 |
tatgaaggttggctgatattctatacaaggagaaggagctgcgtttgaaaatgaaatcgatggaaaaaa |
117 |
Q |
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| T |
1241449 |
tatgaaggttggctgaaactctctacaaggagaagcagttgcgtttgaaaacgaaatcaatggagaaaa |
1241381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 1252162 - 1252094
Alignment:
| Q |
49 |
tatgaaggttggctgatattctatacaaggagaaggagctgcgtttgaaaatgaaatcgatggaaaaaa |
117 |
Q |
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| T |
1252162 |
tatgaaggttggctgaaactctctacaaggagaagcagttgcgtttgaaaacgaaatcaatggagaaaa |
1252094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 1195568 - 1195518
Alignment:
| Q |
49 |
tatgaaggttggctgatattctatacaaggagaaggagctgcgtttgaaaa |
99 |
Q |
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| T |
1195568 |
tatgaaggttggctgagattctatacaaagagcagcagctgcgtttgaaaa |
1195518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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