View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19613_low_26 (Length: 296)
Name: NF19613_low_26
Description: NF19613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19613_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 1984457 - 1984172
Alignment:
| Q |
1 |
tcatcggttggatccggacctttggttataactcgttacacggaattgatgaatggaattatagattccgagaacgatgcaaagattctaagagaaaaag |
100 |
Q |
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| T |
1984457 |
tcatcggttggatcgggacctttggttataactcgttacacggaattgatgaatggaattatagattccgagaacgatgcaaagattctaagagaaaaag |
1984358 |
T |
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| Q |
101 |
ggattattctaaatcacttaaaaagtgataaagaagtggccaacatgtggaatggaatgagcaagtcattgagattgtcaagggtaccattcttggataa |
200 |
Q |
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| T |
1984357 |
ggattattctaaatcacttaaagagtgatcaagaagtggctaacatgtggaatggaatgagcaagttattgagattgtcaagggtaccattcttggataa |
1984258 |
T |
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| Q |
201 |
gactattgaagatgttaacaagagttataataatacaatgaagatcaagatttggaaatttatgaagtcttatgtgtttggttcat |
286 |
Q |
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| T |
1984257 |
gactattgaagatgtaaaccagagttataataatacaatgaagatcaagatttggaaatttatgaagtcttatgtgtttggttcat |
1984172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 1977536 - 1977251
Alignment:
| Q |
1 |
tcatcggttggatccggacctttggttataactcgttacacggaattgatgaatggaattatagattccgagaacgatgcaaagattctaagagaaaaag |
100 |
Q |
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| T |
1977536 |
tcatcggttggatcgggacctttggttataactcgttacacagaattgatgaatggaatcatagactccgagaaagatgcaaagattctaagagaaaaag |
1977437 |
T |
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| Q |
101 |
ggattattctaaatcacttaaaaagtgataaagaagtggccaacatgtggaatggaatgagcaagtcattgagattgtcaagggtaccattcttggataa |
200 |
Q |
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| T |
1977436 |
ggattattctaaatcacttaaagagtgatcaagaagtggctaacatgtggaatggaatgagcaagtcattgagattgtcaagggtaccattcttggataa |
1977337 |
T |
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| Q |
201 |
gactattgaagatgttaacaagagttataataatacaatgaagatcaagatttggaaatttatgaagtcttatgtgtttggttcat |
286 |
Q |
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| T |
1977336 |
gactattgaagatgttaacaagagttataataatacaatgaagatcaagatttggaaatttatgaagtcttatgtgtttggttcat |
1977251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 1948870 - 1949155
Alignment:
| Q |
1 |
tcatcggttggatccggacctttggttataactcgttacacggaattgatgaatggaattatagattccgagaacgatgcaaagattctaagagaaaaag |
100 |
Q |
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| T |
1948870 |
tcatcggttggatcgggaccattggttataacacggtacaccgaattgatgaatggaattatagactcggaagatgatgcgaagattctaagagaaaaag |
1948969 |
T |
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| Q |
101 |
ggattattctaaatcacttaaaaagtgataaagaagtggccaacatgtggaatggaatgagcaagtcattgagattgtcaagggtaccattcttggataa |
200 |
Q |
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| T |
1948970 |
ggattattttaaatcacttgaaaagtgataaagaagttgctgatatgtggaatggaatgagcaagtcattgagattatcaagggtattgttcttggataa |
1949069 |
T |
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| Q |
201 |
gactattgaagatgttaacaagagttataataatacaatgaagatcaagatttggaaatttatgaagtcttatgtgtttggttcat |
286 |
Q |
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| T |
1949070 |
gactattgaagatgttaacaagttttataatagtagaatgaaggtgaaaatgttgaaatttatgaagtcttatgtgtttggttcat |
1949155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 46 - 219
Target Start/End: Original strand, 5625935 - 5626108
Alignment:
| Q |
46 |
ttgatgaatggaattatagattccgagaacgatgcaaagattctaagagaaaaagggattattctaaatcacttaaaaagtgataaagaagtggccaaca |
145 |
Q |
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| T |
5625935 |
ttgatgaatggaatcatagacactgaggaagatgcaaggattcttagagaaaaaggggttattttgaaccatttaaaaagtgatcaagaggtggctaatt |
5626034 |
T |
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| Q |
146 |
tgtggaatggaatgagcaagtcattgagattgtcaagggtaccattcttggataagactattgaagatgttaac |
219 |
Q |
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| T |
5626035 |
tgtggaatggaatgaacaaatccatcaaattgacaagggttccattcttggataaggtcattgaggatgttaac |
5626108 |
T |
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