View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19613_low_27 (Length: 290)
Name: NF19613_low_27
Description: NF19613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19613_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 82 - 273
Target Start/End: Original strand, 6845811 - 6845998
Alignment:
| Q |
82 |
ataaataattgtcccattgttcttaacaaagagccgcaacctagtatccctgacaaacaaggcgttagttgaggcatgcgtgcgtatacaagtgtttcat |
181 |
Q |
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| T |
6845811 |
ataaataattgtcccattgttcttaacaaagagccgcaacctagtatccctgacaa----ggcgttagttgaggcatgcgtgcgtatgcaagtgtttcat |
6845906 |
T |
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| Q |
182 |
gaacaagctatgtttctctgtaataacagatactcttctgctcaaaaaatgcagaatcacaacctcactacaagaagcgcgtcaactccatg |
273 |
Q |
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| T |
6845907 |
gaacaagctatgtttctctgtaataacagatactcttctgctcaaaaaatgcagaatcacaacctcactacaagaagcgcgtcaactccatg |
6845998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 6844851 - 6844909
Alignment:
| Q |
10 |
ataaatatcatttccttttattttgtaaggattaaaaacgaaaatctcggaatttgaaa |
68 |
Q |
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| T |
6844851 |
ataaatatcatttccttttattttgtaaggattaaaaacgaaaatctcataatttgaaa |
6844909 |
T |
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