View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19613_low_29 (Length: 274)
Name: NF19613_low_29
Description: NF19613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19613_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 22776774 - 22776507
Alignment:
| Q |
1 |
cgggggacactagtagatttaagtatacaaatcgtcagggacagagatctgctttaaggatttcaaggattgtgacagagacattgaaacttgggttgga |
100 |
Q |
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| T |
22776774 |
cgggggacactagtagatttaagtatacgaatcgtcagggacagagatctgctttaaggatttcaaggattgtgacagagacattgaaacttgggttgga |
22776675 |
T |
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| Q |
101 |
ggatgtgagatggttcatgatgggagatgatgatactgtatttatggttgataatgtggttagagttctttcaaaatatgatcatactcaattttattat |
200 |
Q |
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| T |
22776674 |
ggatgtgagatggttcatgatgggagatgatgatactgtgtttatggttgataatgtggttagagttctttcaaaatatgatcatactcaattttattat |
22776575 |
T |
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| Q |
201 |
gttggaagctcctctgagagtcatgttcagaacatacatttctcttatgctatggcttatggtggtgg |
268 |
Q |
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| T |
22776574 |
gttggaagctcctctgagagtcatgttcagaacatacatttctcgtatgctatggcttatggtggtgg |
22776507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 23 - 271
Target Start/End: Complemental strand, 40945366 - 40945118
Alignment:
| Q |
23 |
gtatacaaatcgtcagggacagagatctgctttaaggatttcaaggattgtgacagagacattgaaacttgggttggaggatgtgagatggttcatgatg |
122 |
Q |
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| T |
40945366 |
gtatacaaatcgacagggacaaaggtcagcattgaggatatcaagggttgtgacagagacattgaagcttggattgaaagatgtaagatggtttgtgatg |
40945267 |
T |
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| Q |
123 |
ggagatgatgatactgtatttatggttgataatgtggttagagttctttcaaaatatgatcatactcaattttattatgttggaagctcctctgagagtc |
222 |
Q |
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| T |
40945266 |
ggagatgatgatactgtttttgttgttgataatgttgttagaattctttcaaagtatgaccatagacatttttattatgttggtagttcttctgagagtc |
40945167 |
T |
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| Q |
223 |
atgttcagaacatacatttctcttatgctatggcttatggtggtggtgg |
271 |
Q |
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|||| ||||| || ||||| || ||||||||||| |||||||||||||| |
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| T |
40945166 |
atgtccagaatattcatttttcatatgctatggcatatggtggtggtgg |
40945118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 181 - 268
Target Start/End: Original strand, 5180527 - 5180614
Alignment:
| Q |
181 |
atcatactcaattttattatgttggaagctcctctgagagtcatgttcagaacatacatttctcttatgctatggcttatggtggtgg |
268 |
Q |
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| T |
5180527 |
atcataatcaattttactacgtcggaaactcctctgagagtcatgttcaaaacatacatttctcctattctatgacttatggtggtgg |
5180614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 2619329 - 2619384
Alignment:
| Q |
216 |
gagagtcatgttcagaacatacatttctcttatgctatggcttatggtggtggtgg |
271 |
Q |
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||||||||| | ||||| ||| |||| ||||||| ||||||||||||||||||||| |
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| T |
2619329 |
gagagtcatttgcagaatatatatttttcttatggtatggcttatggtggtggtgg |
2619384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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