View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19613_low_3 (Length: 665)

Name: NF19613_low_3
Description: NF19613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19613_low_3
NF19613_low_3
[»] chr3 (20 HSPs)
chr3 (11-652)||(1560822-1561479)
chr3 (460-632)||(521791-521963)
chr3 (459-631)||(50612900-50613072)
chr3 (462-632)||(36517514-36517684)
chr3 (478-635)||(38176434-38176591)
chr3 (459-640)||(45166218-45166399)
chr3 (478-637)||(31788300-31788459)
chr3 (496-632)||(34624539-34624674)
chr3 (459-612)||(20912187-20912340)
chr3 (459-619)||(23643005-23643165)
chr3 (478-626)||(39145257-39145405)
chr3 (489-615)||(52546759-52546885)
chr3 (482-619)||(51297074-51297210)
chr3 (502-595)||(9496567-9496660)
chr3 (489-632)||(22650451-22650594)
chr3 (562-632)||(43203248-43203318)
chr3 (511-594)||(38169329-38169410)
chr3 (575-632)||(11358880-11358938)
chr3 (579-624)||(544642-544687)
chr3 (537-573)||(29011343-29011379)
[»] chr2 (19 HSPs)
chr2 (459-634)||(13685991-13686166)
chr2 (460-619)||(41464926-41465085)
chr2 (489-619)||(42263844-42263974)
chr2 (464-632)||(35323506-35323674)
chr2 (459-632)||(45093175-45093344)
chr2 (478-611)||(25414934-25415067)
chr2 (489-617)||(3810325-3810453)
chr2 (489-632)||(28429281-28429424)
chr2 (505-628)||(35676349-35676472)
chr2 (489-614)||(14941043-14941169)
chr2 (496-617)||(2752696-2752817)
chr2 (489-608)||(19898943-19899062)
chr2 (490-619)||(29689277-29689403)
chr2 (523-626)||(23454350-23454454)
chr2 (529-632)||(28716435-28716538)
chr2 (503-635)||(36690891-36691022)
chr2 (489-632)||(16058428-16058572)
chr2 (496-591)||(40126563-40126658)
chr2 (489-551)||(28716373-28716435)
[»] chr4 (17 HSPs)
chr4 (461-632)||(24683076-24683247)
chr4 (461-632)||(26179238-26179409)
chr4 (505-633)||(41633216-41633344)
chr4 (489-632)||(18375447-18375589)
chr4 (488-617)||(47281587-47281720)
chr4 (459-632)||(17847568-17847736)
chr4 (489-618)||(37674056-37674185)
chr4 (489-612)||(23348169-23348295)
chr4 (459-574)||(54358170-54358285)
chr4 (496-593)||(47839005-47839102)
chr4 (489-573)||(4512219-4512303)
chr4 (506-615)||(54021318-54021419)
chr4 (489-556)||(41878592-41878659)
chr4 (547-615)||(41878338-41878406)
chr4 (511-594)||(30508980-30509063)
chr4 (584-632)||(4098532-4098580)
chr4 (478-517)||(41497938-41497977)
[»] chr1 (21 HSPs)
chr1 (478-626)||(1270177-1270325)
chr1 (489-635)||(29095578-29095724)
chr1 (489-632)||(34475899-34476042)
chr1 (459-619)||(31032723-31032883)
chr1 (496-619)||(24135768-24135889)
chr1 (489-634)||(20808945-20809090)
chr1 (459-619)||(9098595-9098752)
chr1 (496-613)||(16254874-16254990)
chr1 (489-619)||(34807949-34808079)
chr1 (489-632)||(47550791-47550934)
chr1 (496-576)||(2958754-2958834)
chr1 (507-631)||(4194767-4194891)
chr1 (489-632)||(42480121-42480264)
chr1 (459-626)||(45010206-45010372)
chr1 (547-632)||(41646576-41646660)
chr1 (489-585)||(44714864-44714960)
chr1 (524-632)||(50663730-50663839)
chr1 (489-539)||(4624438-4624488)
chr1 (497-619)||(27143622-27143744)
chr1 (497-629)||(48148793-48148920)
chr1 (564-632)||(7167455-7167523)
[»] chr5 (20 HSPs)
chr5 (478-633)||(32891173-32891328)
chr5 (459-619)||(4391871-4392031)
chr5 (459-619)||(37093937-37094097)
chr5 (489-632)||(228023-228166)
chr5 (489-611)||(3456773-3456895)
chr5 (478-619)||(8692521-8692662)
chr5 (489-615)||(11739275-11739401)
chr5 (488-615)||(38614235-38614365)
chr5 (508-632)||(41326523-41326647)
chr5 (489-632)||(29223465-29223606)
chr5 (496-619)||(34286607-34286729)
chr5 (459-632)||(5481358-5481525)
chr5 (478-617)||(35672355-35672493)
chr5 (459-555)||(40925912-40926008)
chr5 (457-624)||(28434209-28434376)
chr5 (478-553)||(6614291-6614366)
chr5 (478-612)||(31644658-31644780)
chr5 (489-595)||(16516972-16517078)
chr5 (534-591)||(42148899-42148956)
chr5 (587-636)||(6614384-6614433)
[»] chr8 (20 HSPs)
chr8 (496-619)||(39112661-39112784)
chr8 (460-610)||(36473076-36473226)
chr8 (461-619)||(29314012-29314170)
chr8 (480-632)||(4851733-4851885)
chr8 (459-635)||(15561940-15562116)
chr8 (487-626)||(34392114-34392253)
chr8 (489-635)||(41322526-41322672)
chr8 (495-632)||(8551489-8551626)
chr8 (489-619)||(1005602-1005732)
chr8 (460-613)||(11653738-11653894)
chr8 (496-591)||(11643324-11643419)
chr8 (511-632)||(4794121-4794242)
chr8 (489-597)||(2001683-2001790)
chr8 (497-603)||(37919603-37919709)
chr8 (496-595)||(5548972-5549071)
chr8 (555-612)||(33888885-33888942)
chr8 (586-634)||(1196505-1196553)
chr8 (581-632)||(3607036-3607087)
chr8 (489-534)||(33888946-33888991)
chr8 (586-626)||(36473054-36473094)
[»] chr6 (7 HSPs)
chr6 (489-628)||(7646830-7646969)
chr6 (496-612)||(12607123-12607239)
chr6 (457-633)||(29487539-29487715)
chr6 (459-619)||(25935521-25935681)
chr6 (506-593)||(29636994-29637081)
chr6 (553-632)||(17366850-17366929)
chr6 (470-533)||(28898419-28898482)
[»] scaffold0002 (1 HSPs)
scaffold0002 (489-619)||(492679-492809)
[»] chr7 (9 HSPs)
chr7 (489-632)||(17611842-17611985)
chr7 (486-632)||(22326858-22327004)
chr7 (478-626)||(27425798-27425946)
chr7 (489-632)||(23992006-23992149)
chr7 (502-617)||(8307540-8307652)
chr7 (489-572)||(42195437-42195520)
chr7 (509-591)||(25686406-25686488)
chr7 (565-632)||(19479441-19479508)
chr7 (516-594)||(41405797-41405875)
[»] scaffold0132 (2 HSPs)
scaffold0132 (525-612)||(556-642)
scaffold0132 (525-612)||(8516-8602)
[»] scaffold0067 (1 HSPs)
scaffold0067 (512-587)||(19342-19417)


Alignment Details
Target: chr3 (Bit Score: 485; Significance: 0; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 11 - 652
Target Start/End: Original strand, 1560822 - 1561479
Alignment:
Q  11 cacagagcaaagatgaacaaccaacaagatatgtggcacatgaacacacaaactaaaggtgaacatccaacatggtccatgacacaaacctcccaagcac 110  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1560822 cacagagcaaagatgaacaaccaacaagttatgtgccacatgaacacacagactaaaggtgaacatccaacatggtccatgacacaaaccttccaagcac 1560921  T
Q  111 agatggacgattgagaagtagaagccaaaccatacaaacacaatcgggccccaaaacccacaccatcaaactcgatcaataccagcacatgagcagatgc 210  Q
    | |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||      ||||||||| ||||||    
T  1560922 aaatggacgactgagaagtagaagccaaaccatacaaacacaatcgggccccaaagcccacaccatcaaactcgatca------gcacatgagtagatgc 1561015  T
Q  211 taccaaggttttttaccaaggaaccacttgcacaaagaaagtttcaccctatgcattagatgctcgacggaaagagatccatcaacaaagattatatcat 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  1561016 taccaaggttttttaccaaggaaccacttgcacaaagaaagtttcaccctatgcatcagatgctcgacggaaagagatccaccaacaaagattatatcat 1561115  T
Q  311 tgggtgatctttcaggttcttctatcttgtctactcgacactagctatgggtcaaacctaacaatatatgtcacacgtaacacattagtagaaatagatt 410  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1561116 tgggtgagctttcaggttcttctatcttgtctactcgacactagctatgggtcaaacctaacaatatatgtcacacgtaacacattagtagaaatagatt 1561215  T
Q  411 catggcaaacctattaaacttgatacatattcaaaaaggaaaatgc-----------------atgcatcaagaattttttcgaacacagttgataagtt 493  Q
    ||||||||||||||||||||||||||||||||||||||||||||||                 ||| |||||||||||||||  |||||| ||| |||||    
T  1561216 catggcaaacctattaaacttgatacatattcaaaaaggaaaatgctatttccagcgaaggaaatgaatcaagaattttttcagacacagctgacaagtt 1561315  T
Q  494 tcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttgaag 593  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1561316 tcaattgcatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttgaag 1561415  T
Q  594 aatttttgatgttatttttctagagacatagcactgctcatt-----caaaaaatgatacttgt 652  Q
    |||| ||||||||||||||||||||| ||| |||||||||||     |||||||||||||||||    
T  1561416 aattcttgatgttatttttctagagatataacactgctcattcttcacaaaaaatgatacttgt 1561479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 460 - 632
Target Start/End: Original strand, 521791 - 521963
Alignment:
Q  460 catcaagaattttttcgaacacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaata 559  Q
    |||||||||||||||   |||||||||  |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  521791 catcaagaattttttaagacacagttgtcaagttttaattgcatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaata 521890  T
Q  560 gtgcattgtgattggttgctctttattcttgaagaatttttgatgttatttttctagagacatagcactgctc 632  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||| | |||||| |||||    
T  521891 gtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttatctagatatatagcattgctc 521963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 459 - 631
Target Start/End: Original strand, 50612900 - 50613072
Alignment:
Q  459 gcatcaagaattttttcgaacacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaat 558  Q
    |||||||||||||||    |||||| ||| |||||| ||||| || ||||||||||||||||  |||||||||| |||||||||||||||||||||||||    
T  50612900 gcatcaagaatttttcaatacacagctgacaagttttaattgcataatttatttgttcactttatatttttcagtcacacctccttgaattgtggcaaat 50612999  T
Q  559 agtgcattgtgattggttgctctttattcttgaagaatttttgatgttatttttctagagacatagcactgct 631  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||    
T  50613000 agtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttttctagagatatagcattgct 50613072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 462 - 632
Target Start/End: Complemental strand, 36517684 - 36517514
Alignment:
Q  462 tcaagaattttttcgaacacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagt 561  Q
    ||||||||||||   ||||||||||  |||||| ||||| |||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||    
T  36517684 tcaagaatttttcaaaacacagttggcaagttttaattgcatgatttatttgttcacttcctattttttattcacacctccttgaattgtggcaaatagt 36517585  T
Q  562 gcattgtgattggttgctctttattcttgaagaatttttgatgttatttttctagagacatagcactgctc 632  Q
    ||||||||||||  |||||||||||||||||||||| |||||||||||| |||||| | |||||| |||||    
T  36517584 gcattgtgattgactgctctttattcttgaagaattcttgatgttatttgtctagatatatagcattgctc 36517514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 478 - 635
Target Start/End: Original strand, 38176434 - 38176591
Alignment:
Q  478 acacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttg 577  Q
    |||||||||  |||||| ||||| ||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||| ||    
T  38176434 acacagttggcaagttttaattgcatgttttatttgttcacttcatatttttcagccacacctccttgaattgaggcaaatagtgcattgcgattggctg 38176533  T
Q  578 ctctttattcttgaagaatttttgatgttatttttctagagacatagcactgctcatt 635  Q
    |||||||||||||||||||| |||||| |||||||||||||| ||| || ||||||||    
T  38176534 ctctttattcttgaagaattcttgatgatatttttctagagatataacattgctcatt 38176591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 459 - 640
Target Start/End: Complemental strand, 45166399 - 45166218
Alignment:
Q  459 gcatcaagaattttttcgaacacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaat 558  Q
    |||||||||||||||    || ||||||  || ||| ||||| ||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||    
T  45166399 gcatcaagaatttttcaagacgcagttggcaaattttaattgcatgatttatttgtccactccctatttttcagccacgcctccttgaattgtggcaaat 45166300  T
Q  559 agtgcattgtgattggttgctctttattcttgaagaatttttgatgttatttttctagagacatagcactgctcattcaaaa 640  Q
    |||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| ||| || |||||||| ||||    
T  45166299 agtgcattgtgattggctgctctttattattgaagaattcttgatgttatttttctagagatataacattgctcattaaaaa 45166218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 478 - 637
Target Start/End: Complemental strand, 31788459 - 31788300
Alignment:
Q  478 acacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttg 577  Q
    ||||| |||| |||||| || || | ||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||| ||    
T  31788459 acacaattgacaagttttaactgcaagatttatttgttcacttcctatttttcaatcacacctccttgaattgtggtaaatagtgcattgtgattggctg 31788360  T
Q  578 ctctttattcttgaagaatttttgatgttatttttctagagacatagcactgctcattca 637  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||| || ||||| ||||    
T  31788359 ctctttattcttgaagaattcttgatgttatttttctagagatatatcattgctcgttca 31788300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 496 - 632
Target Start/End: Original strand, 34624539 - 34624674
Alignment:
Q  496 aattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttgaagaa 595  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||  |||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  34624539 aattgcatgatttatttgttcacttcctatttttcagccacacttcctcaaattgtggtaaatagtgcattgtgattggctgctctttattcttgaagaa 34624638  T
Q  596 tttttgatgttatttttctagagacatagcactgctc 632  Q
    || || |||||||||||||||||| |||||| |||||    
T  34624639 ttctt-atgttatttttctagagatatagcattgctc 34624674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 459 - 612
Target Start/End: Complemental strand, 20912340 - 20912187
Alignment:
Q  459 gcatcaagaattttttcgaacacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaat 558  Q
    |||||||||||||||    ||| || |||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||| |||| || |||||    
T  20912340 gcatcaagaatttttaaagacatagctgataagttttaattgcatgatttatttgttcacttcctatttttcagtcacacctccttaaattatgacaaat 20912241  T
Q  559 agtgcattgtgattggttgctctttattcttgaagaatttttgatgttattttt 612  Q
    |||||||||| ||||  |||||||||||||||||||||| ||||||||||||||    
T  20912240 agtgcattgttattgactgctctttattcttgaagaattcttgatgttattttt 20912187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 459 - 619
Target Start/End: Original strand, 23643005 - 23643165
Alignment:
Q  459 gcatcaagaattttttcgaacacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaat 558  Q
    |||||||||||||||    |||||| ||| || ||| ||||  || ||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  23643005 gcatcaagaatttttcaagacacagctgacaaattttaattccataatttatttgttcacttcctattttttagtcacacctccttgaattgtggcaaat 23643104  T
Q  559 agtgcattgtgattggttgctctttattcttgaagaatttttgatgttatttttctagaga 619  Q
    |||||||||||||||  |  | ||||||||||||||||| |||||||||||||||||||||    
T  23643105 agtgcattgtgattgactaatatttattcttgaagaattcttgatgttatttttctagaga 23643165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 478 - 626
Target Start/End: Complemental strand, 39145405 - 39145257
Alignment:
Q  478 acacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttg 577  Q
    |||||||||  |||||| ||||||||||||| |||||||| |||||||||||||| || ||||| ||||||||| |||||||||||||||| ||||| ||    
T  39145405 acacagttgtcaagttttaattgtatgatttctttgttcatttcctatttttcagtcatacctcattgaattgtagcaaatagtgcattgtaattggctg 39145306  T
Q  578 ctctttattcttgaagaatttttgatgttatttttctagagacatagca 626  Q
    || ||||||||| ||||||| ||||| ||||||||||||||| ||||||    
T  39145305 ctttttattcttaaagaattcttgatattatttttctagagatatagca 39145257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 489 - 615
Target Start/End: Complemental strand, 52546885 - 52546759
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattct 588  Q
    |||||| ||||| || ||||||||||||| |||||||||||||  |||||||| |||||||||| |||||||  |||||||||||| |||||||||||||    
T  52546885 aagttttaattgcataatttatttgttcatttcctatttttcactcacacctcattgaattgtgacaaatagcacattgtgattggctgctctttattct 52546786  T
Q  589 tgaagaatttttgatgttatttttcta 615  Q
    |||||||||||||||||||||||||||    
T  52546785 tgaagaatttttgatgttatttttcta 52546759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 482 - 619
Target Start/End: Original strand, 51297074 - 51297210
Alignment:
Q  482 agttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctct 581  Q
    ||||||||| ||| ||||| ||||||||||||||||||| ||||||||||| || ||||  ||||||||||||||||||||||||||| |||| || |||    
T  51297074 agttgataaattttaattgcatgatttatttgttcactttctatttttcagtcatacctttttgaattgtggcaaatagtgcattgtggttggctgttct 51297173  T
Q  582 ttattcttgaagaatttttgatgttatttttctagaga 619  Q
    |||| ||||||| | | |||||||||||||||||||||    
T  51297174 ttatgcttgaag-actcttgatgttatttttctagaga 51297210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 502 - 595
Target Start/End: Complemental strand, 9496660 - 9496567
Alignment:
Q  502 atgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttgaagaa 595  Q
    |||||||||||||||||| ||||||||||||| ||||| |  || ||||||||||| |||| ||||||||||| | ||||||||||||||||||    
T  9496660 atgatttatttgttcactccctatttttcagcaacaccactgtgtattgtggcaaacagtgaattgtgattggctactctttattcttgaagaa 9496567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 489 - 632
Target Start/End: Original strand, 22650451 - 22650594
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattct 588  Q
    |||||| ||||| |||||||||||||||||||  || ||||||||||||||||||| ||||||| || ||| ||  |||| ||||  || ||||||||||    
T  22650451 aagttttaattgcatgatttatttgttcactttttacttttcagccacacctccttaaattgtgtcagataatgatttgtaattgactgttctttattct 22650550  T
Q  589 tgaagaatttttgatgttatttttctagagacatagcactgctc 632  Q
    | ||||   | |||||||| ||||||| ||| |||||| |||||    
T  22650551 taaagagactgtgatgttacttttctaaagatatagcattgctc 22650594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 562 - 632
Target Start/End: Complemental strand, 43203318 - 43203248
Alignment:
Q  562 gcattgtgattggttgctctttattcttgaagaatttttgatgttatttttctagagacatagcactgctc 632  Q
    ||||||||||||| ||||||||||| |||||||||| |||||||||||||| |||| | |||||| |||||    
T  43203318 gcattgtgattggctgctctttatttttgaagaattcttgatgttatttttttagaaatatagcattgctc 43203248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 511 - 594
Target Start/End: Original strand, 38169329 - 38169410
Alignment:
Q  511 ttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttgaaga 594  Q
    ||||||||||||||||||| || |||||||||||| |||||| |||  |||| ||||||||||  | ||||||||| |||||||    
T  38169329 ttgttcacttcctattttttagtcacacctccttgtattgtgacaa--agtggattgtgattgactactctttattattgaaga 38169410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 575 - 632
Target Start/End: Complemental strand, 11358938 - 11358880
Alignment:
Q  575 ttgctctttattcttgaagaatttttg-atgttatttttctagagacatagcactgctc 632  Q
    ||||||||||||| ||||||||||||  |||||||||||||||||| |||||| |||||    
T  11358938 ttgctctttattcgtgaagaatttttttatgttatttttctagagatatagcattgctc 11358880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 579 - 624
Target Start/End: Complemental strand, 544687 - 544642
Alignment:
Q  579 tctttattcttgaagaatttttgatgttatttttctagagacatag 624  Q
    ||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  544687 tctttattcttgaagaattcttggtgttatttttctagagatatag 544642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 573
Target Start/End: Original strand, 29011343 - 29011379
Alignment:
Q  537 acctccttgaattgtggcaaatagtgcattgtgattg 573  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  29011343 acctccttgaattgtggtaaatagtacattgtgattg 29011379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 5e-61; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 459 - 634
Target Start/End: Complemental strand, 13686166 - 13685991
Alignment:
Q  459 gcatcaagaattttttcgaacacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaat 558  Q
    ||||||||||||||||   ||||| |||  |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  13686166 gcatcaagaattttttaagacacaattggcaagttttaattgcatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaagt 13686067  T
Q  559 agtgcattgtgattggttgctctttattcttgaagaatttttgatgttatttttctagagacatagcactgctcat 634  Q
    |||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||| |||||| |||||||    
T  13686066 agtgcattgtgattggctgctctttattcttgaaaaattcttgatgttatttttctagagatatagcattgctcat 13685991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 460 - 619
Target Start/End: Original strand, 41464926 - 41465085
Alignment:
Q  460 catcaagaattttttcgaacacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaata 559  Q
    ||||||||||||||    |||||||||| |||||| ||||| ||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||    
T  41464926 catcaagaatttttcaagacacagttgacaagttttaattgcatgatttatttgttcactttctatttttcaaccacacctccttgaattgcggcaaata 41465025  T
Q  560 gtgcattgtgattggttgctctttattcttgaagaatttttgatgttatttttctagaga 619  Q
    ||||||||||||  | ||| |||||||||||||||||| |||||||||||||||||||||    
T  41465026 gtgcattgtgatccgctgcactttattcttgaagaattcttgatgttatttttctagaga 41465085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 489 - 619
Target Start/End: Complemental strand, 42263974 - 42263844
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattct 588  Q
    |||||| ||||| || ||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||    
T  42263974 aagttttaattgcataatttatttgttcatttcctatttttcagccacacctccttgaattgtgacaaattgtgcattgtgattggctgctctttattct 42263875  T
Q  589 tgaagaatttttgatgttatttttctagaga 619  Q
    ||||||||| |||||||||||||||||||||    
T  42263874 tgaagaattcttgatgttatttttctagaga 42263844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 464 - 632
Target Start/End: Original strand, 35323506 - 35323674
Alignment:
Q  464 aagaattttttcgaacacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgc 563  Q
    ||||||||||||  |||||||||| |||||| ||||  ||||||||| |||||| ||  ||||||||||||||||||| ||||||||||||||||||||     
T  35323506 aagaattttttcagacacagttgacaagttttaattacatgatttatatgttcagtttttatttttcagccacacctcattgaattgtggcaaatagtgt 35323605  T
Q  564 attgtgattggttgctctttattcttgaagaatttttgatgttatttttctagagacatagcactgctc 632  Q
    ||||||||||  || ||||||||||||||||||||||||||||||||||||| | | ||||||||||||    
T  35323606 attgtgattgactgttctttattcttgaagaatttttgatgttatttttctataaatatagcactgctc 35323674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 459 - 632
Target Start/End: Original strand, 45093175 - 45093344
Alignment:
Q  459 gcatcaagaattttttcgaacacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaat 558  Q
    ||||||||||||||||   | |||||||  || ||| ||||| |||||||| ||||| |||||||||||||||| || ||||||||||||||||||||||    
T  45093175 gcatcaagaattttttaagatacagttgggaaattttaattgcatgatttaattgtttacttcctatttttcagtcatacctccttgaattgtggcaaat 45093274  T
Q  559 agtgcattgtgattggttgctctttattcttgaagaatttttgatgttatttttctagagacatagcactgctc 632  Q
    ||||||||||||    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  45093275 agtgcattgtga----ttgctctttattcttgaagaattattgatgttatttttctagagatatagcactgctc 45093344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 478 - 611
Target Start/End: Complemental strand, 25415067 - 25414934
Alignment:
Q  478 acacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttg 577  Q
    |||||| |||||||||| ||||| ||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||  ||    
T  25415067 acacagctgataagttttaattgcatgatttatttgttcactttctttttttcagccatacctccttgaattgtggcaaatagtgcattgtgattgactg 25414968  T
Q  578 ctctttattcttgaagaatttttgatgttatttt 611  Q
     ||||||||||||||||||| |||||||||||||    
T  25414967 ttctttattcttgaagaattcttgatgttatttt 25414934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 489 - 617
Target Start/End: Original strand, 3810325 - 3810453
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattct 588  Q
    |||||| ||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||| | |||||||||||    
T  3810325 aagttttaattgcatgatttatttgttcacttcttatttttcagtcacacctccttgaattgtggcaaatagtgcattgtaattggctactctttattct 3810424  T
Q  589 tgaagaatttttgatgttatttttctaga 617  Q
    ||||||||| || ||||||||||||||||    
T  3810425 tgaagaattattaatgttatttttctaga 3810453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 489 - 632
Target Start/End: Complemental strand, 28429424 - 28429281
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattct 588  Q
    |||||| ||||| |||||||||||||||||||| |||||||||| ||||||||||| |||| ||||||||| ||||||||| |||| |||||||||||||    
T  28429424 aagttttaattgcatgatttatttgttcacttcttatttttcagtcacacctccttaaattatggcaaataatgcattgtgtttggctgctctttattct 28429325  T
Q  589 tgaagaatttttgatgttatttttctagagacatagcactgctc 632  Q
    ||||||||| ||||| ||||||||||| ||| |||||| |||||    
T  28429324 tgaagaattcttgatattatttttctaaagatatagcattgctc 28429281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 505 - 628
Target Start/End: Original strand, 35676349 - 35676472
Alignment:
Q  505 atttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttgaagaatttttgatg 604  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||  |||||||||||||| ||||||| ||||||    
T  35676349 atttatttgttcacttcatatttttcagtcacacctccttgaattgtggcaaatagtgcattgtggttgactgctctttattcttaaagaattcttgatg 35676448  T
Q  605 ttatttttctagagacatagcact 628  Q
    |||||||| |||||| ||| ||||    
T  35676449 ttatttttttagagatataacact 35676472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 489 - 614
Target Start/End: Original strand, 14941043 - 14941169
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttc-agccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattc 587  Q
    |||||| ||||  |||||||||||||||||||| |||||||| || |||||||| |||||||||||||||||||||||||||||||  ||||||||||||    
T  14941043 aagttttaatttcatgatttatttgttcacttcttatttttcgagtcacacctctttgaattgtggcaaatagtgcattgtgattgactgctctttattc 14941142  T
Q  588 ttgaagaatttttgatgttatttttct 614  Q
    |||||||||| ||||||||||||||||    
T  14941143 ttgaagaattattgatgttatttttct 14941169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 496 - 617
Target Start/End: Original strand, 2752696 - 2752817
Alignment:
Q  496 aattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttgaagaa 595  Q
    ||||||||||||||||| |||||||| |||||||||| || | |||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||    
T  2752696 aattgtatgatttatttattcacttcttatttttcagtcagatctccttgaattgtggcaaatagtgcattgtgattggctgctattttttcttgaagaa 2752795  T
Q  596 tttttgatgttatttttctaga 617  Q
    || || ||||||||||||||||    
T  2752796 ttcttaatgttatttttctaga 2752817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 489 - 608
Target Start/End: Complemental strand, 19899062 - 19898943
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattct 588  Q
    |||||| ||||| ||||||||||||||||||||||| |||||||| | |||||||||||||||| |||||| |||||||||||||| |||||||||||||    
T  19899062 aagttttaattgcatgatttatttgttcacttcctaattttcagcaatacctccttgaattgtgacaaataatgcattgtgattggctgctctttattct 19898963  T
Q  589 tgaagaatttttgatgttat 608  Q
    ||||||||| || |||||||    
T  19898962 tgaagaattcttaatgttat 19898943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 490 - 619
Target Start/End: Original strand, 29689277 - 29689403
Alignment:
Q  490 agtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattctt 589  Q
    ||||| ||||| |||||||||| |||||||||||||||||||| || ||||||||||||| | |||||||||||||||||||   |||||||||||||||    
T  29689277 agttttaattgcatgatttattagttcacttcctatttttcagtcaaacctccttgaattatagcaaatagtgcattgtgat---ttgctctttattctt 29689373  T
Q  590 gaagaatttttgatgttatttttctagaga 619  Q
     || |||| |||||||||||||||||||||    
T  29689374 aaaaaattcttgatgttatttttctagaga 29689403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 523 - 626
Target Start/End: Original strand, 23454350 - 23454454
Alignment:
Q  523 tatttttcagccacacctccttgaattgtggcaaat-agtgcattgtgattggttgctctttattcttgaagaatttttgatgttatttttctagagaca 621  Q
    |||||||||| | ||||||||||||||||| ||||| |||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||| |    
T  23454350 tatttttcagtcgcacctccttgaattgtgtcaaattagtgcattgtgattgactgctctttattcttgaagaattttttatgttatttttctagagata 23454449  T
Q  622 tagca 626  Q
    |||||    
T  23454450 tagca 23454454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 529 - 632
Target Start/End: Original strand, 28716435 - 28716538
Alignment:
Q  529 tcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttgaagaatttttgatgttatttttctagagacatagcact 628  Q
    ||||||||||||| ||||||||||||||||||||||||||||| || | || ||||||||||||||||| ||||||| ||||||||||||| ||| || |    
T  28716435 tcagccacacctctttgaattgtggcaaatagtgcattgtgatcggctactatttattcttgaagaattcttgatgtcatttttctagagatataacatt 28716534  T
Q  629 gctc 632  Q
    ||||    
T  28716535 gctc 28716538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 503 - 635
Target Start/End: Original strand, 36690891 - 36691022
Alignment:
Q  503 tgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttgaagaatttttga 602  Q
    |||||||||||||||||||||| ||| ||||||| | |||||||||||||||||||| || ||| | ||||| || | |||||| |||||||||||||||    
T  36690891 tgatttatttgttcacttcctacttt-cagccacgcttccttgaattgtggcaaatactgtattataattggatgttttttatttttgaagaatttttga 36690989  T
Q  603 tgttatttttctagagacatagcactgctcatt 635  Q
    |||||| ||| |||||| ||| || ||||||||    
T  36690990 tgttatatttttagagatataacattgctcatt 36691022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 489 - 632
Target Start/End: Original strand, 16058428 - 16058572
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagccacac--ctccttgaattgtggcaaatagtgcattgtgattggttgctctttatt 586  Q
    |||||| | ||| ||||||||||| |||||||| ||||||||||||||||  |||||||||||||| ||||| || |||| | || |  | |||||||||    
T  16058428 aagttttatttgcatgatttatttattcacttcatatttttcagccacacaactccttgaattgtgacaaat-gttcattattatagactactctttatt 16058526  T
Q  587 cttgaagaatttttgatgttatttttctagagacatagcactgctc 632  Q
    ||||||||||| || |||||||||||||||||| |||||| |||||    
T  16058527 cttgaagaattcttaatgttatttttctagagatatagcattgctc 16058572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 496 - 591
Target Start/End: Original strand, 40126563 - 40126658
Alignment:
Q  496 aattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttga 591  Q
    |||||||||||||||||||||||||||||||||||| | | | || ||| |||||||  |||||||||||| ||| ||  ||||||||||||||||    
T  40126563 aattgtatgatttatttgttcacttcctatttttcaactatatcttcttaaattgtgataaatagtgcattatgaatgactgctctttattcttga 40126658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 489 - 551
Target Start/End: Original strand, 28716373 - 28716435
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgt 551  Q
    |||||| ||||| || ||||||||||||||||||||||||||||||||||||| |||||||||    
T  28716373 aagttttaattgcattatttatttgttcacttcctatttttcagccacacctctttgaattgt 28716435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 1e-58; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 461 - 632
Target Start/End: Complemental strand, 24683247 - 24683076
Alignment:
Q  461 atcaagaattttttcgaacacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatag 560  Q
    |||||||||||||    ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||    
T  24683247 atcaagaatttttcaagacacacttgataagttttaattgcatgatttatttgttcacttcctatttttcagtcacaccttcctgaattgtggcaaatag 24683148  T
Q  561 tgcattgtgattggttgctctttattcttgaagaatttttgatgttatttttctagagacatagcactgctc 632  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||    
T  24683147 tgcattgtgattggctgctctttattcttgaagaattcttgatgttatttttctagagatatagcattgctc 24683076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 461 - 632
Target Start/End: Original strand, 26179238 - 26179409
Alignment:
Q  461 atcaagaattttttcgaacacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatag 560  Q
    ||||||||||||||  ||||||| ||  |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  26179238 atcaagaattttttaaaacacagctgtcaagtttcaatttgatgatttatttgttcacttcctatttttcagccacacctccttgaattgtgttaaatag 26179337  T
Q  561 tgcattgtgattggttgctctttattcttgaagaatttttgatgttatttttctagagacatagcactgctc 632  Q
    |||| ||||||||| |||||||||||||||||||||| || |||||||||||||||||| ||| || |||||    
T  26179338 tgcactgtgattggctgctctttattcttgaagaattcttaatgttatttttctagagatataacattgctc 26179409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 505 - 633
Target Start/End: Complemental strand, 41633344 - 41633216
Alignment:
Q  505 atttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttgaagaatttttgatg 604  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| || |||    
T  41633344 atttatttgttcacttcctatttttcagccacacctccttgaattgtggcaagtagtgcattgtgattggctgctctttattcttgaagaattcttaatg 41633245  T
Q  605 ttatttttctagagacatagcactgctca 633  Q
    ||||||||||||||| ||| || ||||||    
T  41633244 ttatttttctagagatataacattgctca 41633216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 489 - 632
Target Start/End: Original strand, 18375447 - 18375589
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattct 588  Q
    |||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||   || |||||||||    
T  18375447 aagttttaattgcatgatttatttgttcacttcctatttt-cagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgcactttattct 18375545  T
Q  589 tgaagaatttttgatgttatttttctagagacatagcactgctc 632  Q
    ||||||||| ||||||||||||||||||||| ||| || |||||    
T  18375546 tgaagaattcttgatgttatttttctagagatataacattgctc 18375589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 488 - 617
Target Start/End: Original strand, 47281587 - 47281720
Alignment:
Q  488 taagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaatt----gtggcaaatagtgcattgtgattggttgctcttt 583  Q
    ||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||| |    ||||||||||||||||||||||| || | |||||    
T  47281587 taagttttaattgcatgatttatttgttcacttcctatttttcaaccacacctccttgaaattaatgtggcaaatagtgcattgtgatttgtcgttcttt 47281686  T
Q  584 attcttgaagaatttttgatgttatttttctaga 617  Q
    |||||||||||||| |||||||||||||||||||    
T  47281687 attcttgaagaattcttgatgttatttttctaga 47281720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 459 - 632
Target Start/End: Original strand, 17847568 - 17847736
Alignment:
Q  459 gcatcaagaattttttcgaacacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaat 558  Q
    |||||||||||||||    |||||||||  |||||| ||||| ||||||||||||||||||| ||||||||| | |||||||||||||||||||||        
T  17847568 gcatcaagaatttttcaagacacagttggcaagttttaattgcatgatttatttgttcactttctatttttctgtcacacctccttgaattgtggc---- 17847663  T
Q  559 agtgcattgtgattggttgctctttattcttgaagaatttttgatgttatttttctagagacatagcactgctc 632  Q
     ||||||| ||||||  |||| |||| ||||||||||||||| |||||||||||||||||| |||||| |||||    
T  17847664 -gtgcattatgattgactgctttttaatcttgaagaattttttatgttatttttctagagatatagcattgctc 17847736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 489 - 618
Target Start/End: Original strand, 37674056 - 37674185
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattct 588  Q
    |||||| ||||| |||||||||||||| ||||  ||||||||||||||||||| ||||||||| | ||||||| |||||||||||  ||||||||| |||    
T  37674056 aagttttaattgcatgatttatttgttaactttttatttttcagccacacctctttgaattgtagtaaatagtacattgtgattgactgctctttagtct 37674155  T
Q  589 tgaagaatttttgatgttatttttctagag 618  Q
    ||||||||| ||||||||||||||||||||    
T  37674156 tgaagaattcttgatgttatttttctagag 37674185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 489 - 612
Target Start/End: Original strand, 23348169 - 23348295
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcct---atttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttat 585  Q
    |||||| ||||| ||||||||||||||||||||||   |||||||||||||||||||||||||| ||| |||||||| ||||||||||  || |||||||    
T  23348169 aagttttaattgcatgatttatttgttcacttcctcctatttttcagccacacctccttgaattatggtaaatagtgtattgtgattgagtgttctttat 23348268  T
Q  586 tcttgaagaatttttgatgttattttt 612  Q
    |||| ||||||| ||||||||||||||    
T  23348269 tcttaaagaattattgatgttattttt 23348295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 459 - 574
Target Start/End: Complemental strand, 54358285 - 54358170
Alignment:
Q  459 gcatcaagaattttttcgaacacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaat 558  Q
    |||||||||||||||    ||| |||||  |||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  54358285 gcatcaagaatttttcaagacatagttggcaagttttaattgcatgatttatttgttcacttcctatttttcagccacacccccttaaattgtggcaaat 54358186  T
Q  559 agtgcattgtgattgg 574  Q
    ||||||||||||||||    
T  54358185 agtgcattgtgattgg 54358170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 496 - 593
Target Start/End: Original strand, 47839005 - 47839102
Alignment:
Q  496 aattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttgaag 593  Q
    ||||| ||||| | |||||||| || ||||||||| ||||||||||||| |||||||||||||||| ||||||| |||  ||||||||||||||||||    
T  47839005 aattgcatgatgtttttgttcattttctatttttcggccacacctccttaaattgtggcaaatagtacattgtggttgactgctctttattcttgaag 47839102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 489 - 573
Target Start/End: Original strand, 4512219 - 4512303
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattg 573  Q
    |||||| ||||| || ||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||  ||||||||||    
T  4512219 aagttttaattgcatcatttatttgtttacttcctatttttcagtcacatctccttgaattgtggcaaatagtatattgtgattg 4512303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 506 - 615
Target Start/End: Original strand, 54021318 - 54021419
Alignment:
Q  506 tttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttgaagaatttttgatgt 605  Q
    |||||||||| |||| |||||||||| |||||||||||| |||||||||| |||||||||||||||||| ||||        ||||||||||||| ||||    
T  54021318 tttatttgtttactttctatttttcaaccacacctccttaaattgtggcacatagtgcattgtgattggctgct--------ttgaagaatttttaatgt 54021409  T
Q  606 tatttttcta 615  Q
    ||||||||||    
T  54021410 tatttttcta 54021419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 489 - 556
Target Start/End: Complemental strand, 41878659 - 41878592
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaa 556  Q
    |||||| ||||| |||||||||||||| ||||||||||||||||||||||||  ||||||||||||||    
T  41878659 aagttttaattgcatgatttatttgtttacttcctatttttcagccacaccttattgaattgtggcaa 41878592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 547 - 615
Target Start/End: Complemental strand, 41878406 - 41878338
Alignment:
Q  547 attgtggcaaatagtgcattgtgattggttgctctttattcttgaagaatttttgatgttatttttcta 615  Q
    ||||| |||||||||||||||||||||| || ||||||||| |||||||||  ||||||||||||||||    
T  41878406 attgtagcaaatagtgcattgtgattggctgatctttattcatgaagaattcatgatgttatttttcta 41878338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 511 - 594
Target Start/End: Complemental strand, 30509063 - 30508980
Alignment:
Q  511 ttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttgaaga 594  Q
    ||||||| ||||||||||||||  ||| |||  || |||| ||||||||||| ||||| ||||  |||||||||||||||||||    
T  30509063 ttgttcatttcctatttttcagttacatctctgtgtattgcggcaaatagtgtattgtaattgactgctctttattcttgaaga 30508980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 632
Target Start/End: Original strand, 4098532 - 4098580
Alignment:
Q  584 attcttgaagaatttttgatgttatttttctagagacatagcactgctc 632  Q
    |||||||||||||| ||||||||||||||||||||| ||| || |||||    
T  4098532 attcttgaagaattcttgatgttatttttctagagatataacattgctc 4098580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 478 - 517
Target Start/End: Original strand, 41497938 - 41497977
Alignment:
Q  478 acacagttgataagtttcaattgtatgatttatttgttca 517  Q
    ||||||||||||||||| ||||| ||||||||||||||||    
T  41497938 acacagttgataagttttaattgcatgatttatttgttca 41497977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 7e-57; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 478 - 626
Target Start/End: Complemental strand, 1270325 - 1270177
Alignment:
Q  478 acacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttg 577  Q
    |||||||||| |||||| ||||| | ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  1270325 acacagttgacaagttttaattgcacgatttatttattcacttcctatttttcagccacaccttcttgaattgtggcaaatagtgcattgagattggttg 1270226  T
Q  578 ctctttattcttgaagaatttttgatgttatttttctagagacatagca 626  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  1270225 ctctttattcttgaagaattcttgatgttatttttctagagatatagca 1270177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 489 - 635
Target Start/End: Original strand, 29095578 - 29095724
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattct 588  Q
    |||||| ||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29095578 aagttttaattgcatgatatctttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctctttattct 29095677  T
Q  589 tgaagaatttttgatgttatttttctagagacatagcactgctcatt 635  Q
    ||||||||| ||||||||||||||||||||| ||| || ||||||||    
T  29095678 tgaagaattcttgatgttatttttctagagatataacattgctcatt 29095724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 489 - 632
Target Start/End: Complemental strand, 34476042 - 34475899
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattct 588  Q
    |||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||    
T  34476042 aagttttaattgcatgattgatttgttcacttcctatttttcagccacacctccttgaattggggcagatagtgcattgtgattggctgctctttattct 34475943  T
Q  589 tgaagaatttttgatgttatttttctagagacatagcactgctc 632  Q
    ||||||||| ||||||||||||||||||||| |||||| |||||    
T  34475942 tgaagaattcttgatgttatttttctagagatatagcattgctc 34475899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 459 - 619
Target Start/End: Original strand, 31032723 - 31032883
Alignment:
Q  459 gcatcaagaattttttcgaacacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaat 558  Q
    |||||||||||||||    | |||||||| |||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  31032723 gcatcaagaatttttcaagatacagttgacaagttttaattgcatgatttatttgttcactttctatttttcagccacacctccttgaactgtggcaaat 31032822  T
Q  559 agtgcattgtgattggttgctctttattcttgaagaatttttgatgttatttttctagaga 619  Q
    |||||||||||||||  || ||||||||||||||||||| |||||| ||||||||||||||    
T  31032823 agtgcattgtgattgactgatctttattcttgaagaattcttgatgatatttttctagaga 31032883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 496 - 619
Target Start/End: Complemental strand, 24135889 - 24135768
Alignment:
Q  496 aattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttgaagaa 595  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  24135889 aattgcatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaat--tgcattgtgattggctgctctttattcttgaagaa 24135792  T
Q  596 tttttgatgttatttttctagaga 619  Q
    || |||||||||||||||| ||||    
T  24135791 ttcttgatgttatttttcttgaga 24135768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 489 - 634
Target Start/End: Complemental strand, 20809090 - 20808945
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattct 588  Q
    |||||| ||||  ||| |||||| |||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||  |||||||||||||    
T  20809090 aagttttaattacatggtttattcgttcacttcctagttttcagccacatctccttgaattgtggcaaataatgcattgtgattgactgctctttattct 20808991  T
Q  589 tgaagaatttttgatgttatttttctagagacatagcactgctcat 634  Q
    ||||||||| ||||||||||||||||||||| |||||| |||||||    
T  20808990 tgaagaattcttgatgttatttttctagagatatagcattgctcat 20808945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 459 - 619
Target Start/End: Original strand, 9098595 - 9098752
Alignment:
Q  459 gcatcaagaattttttcgaacacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaat 558  Q
    |||||||||||||||   ||||||| ||| |||||| ||||| |||||||||||||||||||| |||| ||||||||||||| |||||||   |||| ||    
T  9098595 gcatcaagaatttttcaaaacacagctgacaagttttaattgcatgatttatttgttcacttcgtattattcagccacaccttcttgaat---ggcagat 9098691  T
Q  559 agtgcattgtgattggttgctctttattcttgaagaatttttgatgttatttttctagaga 619  Q
    |||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||    
T  9098692 agtgcattgtgattggctgctctttattcttaaagaattcttgatgttatttttctagaga 9098752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 496 - 613
Target Start/End: Complemental strand, 16254990 - 16254874
Alignment:
Q  496 aattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttgaagaa 595  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||| || |||||||||||||||||    
T  16254990 aattgtatgatttatttgttcacttcctattattcagccacacctccttaaattatggcaaatagtgcattgtgattggctgatctttattcttgaagaa 16254891  T
Q  596 tttttgatgttatttttc 613  Q
    || || ||||||||||||    
T  16254890 ttctt-atgttatttttc 16254874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 489 - 619
Target Start/End: Complemental strand, 34808079 - 34807949
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattct 588  Q
    |||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||| |||| ||  ||||||| |||||||||||  ||||||||||| |    
T  34808079 aagttttaattgcatgatttatttattcacttcatatttttcagccacacctccttaaattatgataaatagtacattgtgattgactgctctttatttt 34807980  T
Q  589 tgaagaatttttgatgttatttttctagaga 619  Q
    ||||||||| ||||||||||||||| |||||    
T  34807979 tgaagaattcttgatgttatttttcgagaga 34807949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 489 - 632
Target Start/End: Complemental strand, 47550934 - 47550791
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattct 588  Q
    |||||| ||||| ||||||||| |||||| ||||||||||| || ||||||||||| ||||||||||||||||||||||| ||| | |||||||||||||    
T  47550934 aagttttaattgcatgatttatatgttcatttcctattttttagtcacacctccttaaattgtggcaaatagtgcattgtaatttgctgctctttattct 47550835  T
Q  589 tgaagaatttttgatgttatttttctagagacatagcactgctc 632  Q
    ||||   ||||| ||||||||||| |||||| || ||| |||||    
T  47550834 tgaaatttttttaatgttatttttatagagatattgcattgctc 47550791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 496 - 576
Target Start/End: Original strand, 2958754 - 2958834
Alignment:
Q  496 aattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggtt 576  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2958754 aattgcatgatttatttgttcactccctatttttcagccacacctccttgaattttggcaaatagtgcattgtgattggtt 2958834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 507 - 631
Target Start/End: Complemental strand, 4194891 - 4194767
Alignment:
Q  507 ttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttgaagaatttttgatgtt 606  Q
    |||||||||||||||||||||||||| || | ||| ||||||| ||| |||||||  ||||||||||  || ||||||||||||||||||| ||||||||    
T  4194891 ttatttgttcacttcctatttttcagtcatatctctttgaattatggtaaatagtatattgtgattgactgttctttattcttgaagaattcttgatgtt 4194792  T
Q  607 atttttctagagacatagcactgct 631  Q
    ||||||||||||| |||||| ||||    
T  4194791 atttttctagagatatagcattgct 4194767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 489 - 632
Target Start/End: Complemental strand, 42480264 - 42480121
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattct 588  Q
    |||||| ||||| || |||||||| |||| || |||||||||||||||||||| ||||||||||| ||||| | |||||| ||||  |||| ||||||||    
T  42480264 aagttttaattgcataatttatttattcattttctatttttcagccacacctcattgaattgtggtaaataatacattgtaattgactgctatttattct 42480165  T
Q  589 tgaagaatttttgatgttatttttctagagacatagcactgctc 632  Q
    ||||||||| |||||||||||||| |||||| ||| || |||||    
T  42480164 tgaagaattcttgatgttatttttgtagagatataacattgctc 42480121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 459 - 626
Target Start/End: Complemental strand, 45010372 - 45010206
Alignment:
Q  459 gcatcaagaattttttcgaacacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaat 558  Q
    |||| ||||||||||   ||||||  ||| || ||| ||||| |||||||||||||||||||| |||||||||||||||||| || |||||||| |||||    
T  45010372 gcataaagaatttttcaaaacacatctgacaaattttaattgcatgatttatttgttcacttcttatttttcagccacaccttct-gaattgtgacaaat 45010274  T
Q  559 agtgcattgtgattggttgctctttattcttgaagaatttttgatgttatttttctagagacatagca 626  Q
    | |||||| |  |||| |||||||||||||| ||||||| |||||||||| ||| |||||| ||||||    
T  45010273 aatgcattatatttggatgctctttattcttaaagaattcttgatgttatctttttagagatatagca 45010206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 547 - 632
Target Start/End: Complemental strand, 41646660 - 41646576
Alignment:
Q  547 attgtggcaaatagtgcattgtgattggttgctctttattcttgaagaatttttgatgttatttttctagagacatagcactgctc 632  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||| || |||||||||||||||||||| | |||| |||||    
T  41646660 attgtggcaaatagtgcattgtgattgactgctctttattcttgaagaa-ttctgatgttatttttctagagatacagcattgctc 41646576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 489 - 585
Target Start/End: Original strand, 44714864 - 44714960
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttat 585  Q
    |||||| ||||||||||||||||| || | ||  ||||||||||||||| ||| ||||||||||||||||| |||||||||||||  ||||||||||    
T  44714864 aagttttaattgtatgatttatttttttattttttatttttcagccacatctcgttgaattgtggcaaataatgcattgtgattgactgctctttat 44714960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 524 - 632
Target Start/End: Complemental strand, 50663839 - 50663730
Alignment:
Q  524 atttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttgaagaatttttgatgttat-ttttctagagacat 622  Q
    ||||||||| ||||| |||||||||||||| ||||| |||||| | |||   ||||||||||||||| | ||||||||||||||| |||| |||||| ||    
T  50663839 atttttcagtcacacgtccttgaattgtggtaaataatgcattatcattcactgctctttattcttgtaaaatttttgatgttattttttttagagatat 50663740  T
Q  623 agcactgctc 632  Q
    |||| |||||    
T  50663739 agcattgctc 50663730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 489 - 539
Target Start/End: Complemental strand, 4624488 - 4624438
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagccacacc 539  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  4624488 aagttttaattgcatgatttatttgttcacttcctatttttcagccacacc 4624438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 497 - 619
Target Start/End: Original strand, 27143622 - 27143744
Alignment:
Q  497 attgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttgaagaat 596  Q
    ||||||| || |||||||| |||||||||||||||  |||||||| || |||||| ||||||| | |||||||||||   ||| ||||||||| ||||      
T  27143622 attgtattatgtatttgtttacttcctatttttcaatcacacctctttaaattgtagcaaataatacattgtgattgacggctttttattcttaaagaga 27143721  T
Q  597 ttttgatgttatttttctagaga 619  Q
    |  |||| |||||||||||||||    
T  27143722 tggtgatattatttttctagaga 27143744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 497 - 629
Target Start/End: Complemental strand, 48148920 - 48148793
Alignment:
Q  497 attgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttgaagaat 596  Q
    |||| ||||||||||  |||||||  ||||||||||||||| ||||    ||||||| ||||||||||||| |||||  || ||||||||||||||||      
T  48148920 attgcatgatttatta-ttcactttttatttttcagccacatctcc----attgtggaaaatagtgcattgggattgactggtctttattcttgaagaga 48148826  T
Q  597 ttttgatgttatttttctagagacatagcactg 629  Q
    || ||||  | |||||||||||| ||| |||||    
T  48148825 ttgtgatactctttttctagagatataacactg 48148793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 564 - 632
Target Start/End: Original strand, 7167455 - 7167523
Alignment:
Q  564 attgtgattggttgctctttattcttgaagaatttttgatgttatttttctagagacatagcactgctc 632  Q
    ||||||||||  || ||||||||||||||||||| |||| ||||||||| |||| | |||||| |||||    
T  7167455 attgtgattgactgttctttattcttgaagaattcttgacgttatttttttagaaatatagcattgctc 7167523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 7e-54; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 478 - 633
Target Start/End: Complemental strand, 32891328 - 32891173
Alignment:
Q  478 acacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttg 577  Q
    |||||||||| || ||| ||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  32891328 acacagttgacaaattttaattgcatgatttatttgttcacttcctatcttttagccacacctccttgaattgtggcaaatagtgcattgtgattggctg 32891229  T
Q  578 ctctttattcttgaagaatttttgatgttatttttctagagacatagcactgctca 633  Q
    || ||||||||||||||||| ||||||||||||||||||||| ||| || ||||||    
T  32891228 ctttttattcttgaagaattcttgatgttatttttctagagatataacattgctca 32891173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 459 - 619
Target Start/End: Original strand, 4391871 - 4392031
Alignment:
Q  459 gcatcaagaattttttcgaacacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaat 558  Q
    |||||||||||||||    |||||| ||  |||||| ||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  4391871 gcatcaagaatttttcaagacacagctggcaagttttaattgcataatttatttgttcacttcctatttttcagccacagctccttgaattgtggcaaac 4391970  T
Q  559 agtgcattgtgattggttgctctttattcttgaagaatttttgatgttatttttctagaga 619  Q
    |||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  4391971 agtgcattgtaattggctgctctttattcttgaagaattcttgatgttatttttctagaga 4392031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 459 - 619
Target Start/End: Original strand, 37093937 - 37094097
Alignment:
Q  459 gcatcaagaattttttcgaacacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaat 558  Q
    |||||||||||||||    |||||||||| |||||| ||||| || |||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  37093937 gcatcaagaatttttcaagacacagttgacaagttttaattgcataatttatttgttcacttcctatttttcagtcacacctccttgaattgttgcaaat 37094036  T
Q  559 agtgcattgtgattggttgctctttattcttgaagaatttttgatgttatttttctagaga 619  Q
    ||| || ||||||||  |||||||||||||||||||||| |||||||||||||||||||||    
T  37094037 agtacaatgtgattgactgctctttattcttgaagaattgttgatgttatttttctagaga 37094097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 489 - 632
Target Start/End: Complemental strand, 228166 - 228023
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattct 588  Q
    |||||| ||||| ||||| ||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||    
T  228166 aagttttaattgcatgatatatttgttcactttctacttttcagtcacacctccttgaattgtggtaaatagtgcattgtgattgattgttctttattct 228067  T
Q  589 tgaagaatttttgatgttatttttctagagacatagcactgctc 632  Q
    |||| |||| ||||||||||||||||||||| ||| || |||||    
T  228066 tgaaaaattcttgatgttatttttctagagatatatcattgctc 228023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 489 - 611
Target Start/End: Complemental strand, 3456895 - 3456773
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattct 588  Q
    |||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||  |||||||||||||    
T  3456895 aagttttaattgcatgatttatttgttcacttcctatttttcagtcacacctccttgaattgtggcaaatagtgcattgtgagtgactgctctttattct 3456796  T
Q  589 tgaagaatttttgatgttatttt 611  Q
    |||||||||  | ||||||||||    
T  3456795 tgaagaattcgtaatgttatttt 3456773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 478 - 619
Target Start/End: Complemental strand, 8692662 - 8692521
Alignment:
Q  478 acacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttg 577  Q
    |||||| ||| || ||| ||||| ||||||||||| ||||||| ||||||||| ||||||| |||||||||||||||||||||| |||| ||||||| ||    
T  8692662 acacagctgacaaattttaattgcatgatttatttattcactttctatttttctgccacacttccttgaattgtggcaaatagtacattatgattggatg 8692563  T
Q  578 ctctttattcttgaagaatttttgatgttatttttctagaga 619  Q
    || ||||||||||||||||| |||||||||||||||||||||    
T  8692562 ctatttattcttgaagaattcttgatgttatttttctagaga 8692521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 489 - 615
Target Start/End: Original strand, 11739275 - 11739401
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattct 588  Q
    |||||| ||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||   |||| ||||||||    
T  11739275 aagttttaattgcataatttatttgttcacctcctatttttcagccacacctccttgaattgtggcaaacagtgcattatgattacctgctttttattct 11739374  T
Q  589 tgaagaatttttgatgttatttttcta 615  Q
    ||||||||| |||||||||||||||||    
T  11739375 tgaagaattcttgatgttatttttcta 11739401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 488 - 615
Target Start/End: Original strand, 38614235 - 38614365
Alignment:
Q  488 taagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattc 587  Q
    ||||||| ||||| |||||||||||||| ||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||  |||||||||||    
T  38614235 taagttttaattgcatgatttatttgtttacttcctatttttcagccacatcttcttgaattgtggcaattagtgcattgtgattgggcgctctttattc 38614334  T
Q  588 tt---gaagaatttttgatgttatttttcta 615  Q
    ||   |||||||| |||||||||||||||||    
T  38614335 ttgaagaagaattcttgatgttatttttcta 38614365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 508 - 632
Target Start/End: Original strand, 41326523 - 41326647
Alignment:
Q  508 tatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttgaagaatttttgatgtta 607  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||||||  |||||||||||| |||||||||||||||||||  |  ||||||||    
T  41326523 tatttgtttacttcctatttttcagccacacctccttgaattgtgtcaaatagcacattgtgattggctgctctttattcttgaagagatcgtgatgtta 41326622  T
Q  608 tttttctagagacatagcactgctc 632  Q
    |||||||||||| |||||| |||||    
T  41326623 tttttctagagatatagcattgctc 41326647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 489 - 632
Target Start/End: Complemental strand, 29223606 - 29223465
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattct 588  Q
    |||||| ||||| ||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||  ||||| ||||| |    
T  29223606 aagttttaattgcatgatttatttgtacacttcttatttttcagtcacacctccttgaattgtggcaaatagtgcattgtggttgactgctc-ttatt-t 29223509  T
Q  589 tgaagaatttttgatgttatttttctagagacatagcactgctc 632  Q
    ||||||||| ||||| ||||||||||| ||| ||||||||||||    
T  29223508 tgaagaattcttgatattatttttctaaagatatagcactgctc 29223465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 496 - 619
Target Start/End: Complemental strand, 34286729 - 34286607
Alignment:
Q  496 aattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttgaagaa 595  Q
    ||||| |||||||||||||||| |||||||||||||||||||||| | | |||||||||||||||||||| |||||||| |||| |||||||||||| ||    
T  34286729 aattgcatgatttatttgttcatttcctatttttcagccacaccttcattaattgtggcaaatagtgcatcgtgattggctgct-tttattcttgaataa 34286631  T
Q  596 tttttgatgttatttttctagaga 619  Q
    || |||||||||||||| ||||||    
T  34286630 ttattgatgttatttttttagaga 34286607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 459 - 632
Target Start/End: Complemental strand, 5481525 - 5481358
Alignment:
Q  459 gcatcaagaattttttcgaacacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaat 558  Q
    ||||||||||||||||   ||||||||| ||| ||| || || |||||||||||||||||||  ||||||||||||||| |||  |||||||||||||||    
T  5481525 gcatcaagaattttttaagacacagttggtaaattttaactgcatgatttatttgttcactttttatttttcagccacatctctatgaattgtggcaaat 5481426  T
Q  559 agtgcattgtgattggttgctctttattcttgaagaatttttgatgttatttttctagagacatagcactgctc 632  Q
    | |||||||||| |||      ||||||||| ||||||||||||| |||||||||||| || |||||| |||||    
T  5481425 aatgcattgtgaatgg------tttattcttaaagaatttttgatattatttttctagtgatatagcattgctc 5481358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 478 - 617
Target Start/End: Original strand, 35672355 - 35672493
Alignment:
Q  478 acacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttg 577  Q
    ||||||||||||| ||| ||||| ||||||||||||||||||||||||| || | | |||  ||||| ||||| |  |||||||||||||||||||  ||    
T  35672355 acacagttgataaattttaattgcatgatttatttgttcacttcctattgttta-caacatttccttaaattgcgataaatagtgcattgtgattgactg 35672453  T
Q  578 ctctttattcttgaagaatttttgatgttatttttctaga 617  Q
    ||||||||||||||| |||| || ||||||||||||||||    
T  35672454 ctctttattcttgaaaaattcttaatgttatttttctaga 35672493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 459 - 555
Target Start/End: Complemental strand, 40926008 - 40925912
Alignment:
Q  459 gcatcaagaattttttcgaacacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggca 555  Q
    |||||||||||||||    |||||  ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40926008 gcatcaagaatttttcaagacacatctgacaagttttaattgtatgatttatttgttcacttcctatttttcagccacacctctttgaattgtggca 40925912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 457 - 624
Target Start/End: Complemental strand, 28434376 - 28434209
Alignment:
Q  457 atgcatcaagaattttttcgaacacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaa 556  Q
    ||||||||||||||||||   | ||||||    ||||| ||||| ||||||||||| |||| || ||||||| ||| |||| || ||| |||||||| ||    
T  28434376 atgcatcaagaatttttttagatacagttagcgagttttaattgcatgatttatttattcattttctattttacagtcacatcttcttaaattgtggtaa 28434277  T
Q  557 atagtgcattgtgattggttgctctttattcttgaagaatttttgatgttatttttctagagacatag 624  Q
    |||||||||||| ||||| ||||||||||| || ||||||| |  |||||||||||||||||| ||||    
T  28434276 atagtgcattgtaattggctgctctttatttttaaagaattctcaatgttatttttctagagatatag 28434209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 478 - 553
Target Start/End: Original strand, 6614291 - 6614366
Alignment:
Q  478 acacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtgg 553  Q
    ||||||| || |||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6614291 acacagtcgacaagttttaattgcatgatttatttgttcacttcctatttttcaggcacacctccttgaattgtgg 6614366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 478 - 612
Target Start/End: Complemental strand, 31644780 - 31644658
Alignment:
Q  478 acacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttg 577  Q
    ||||| ||| ||||||| ||||| ||| |||||||||||||||||||||||||| ||||| |            || |||||||||||||||||||| ||    
T  31644780 acacaattggtaagttttaattgcatggtttatttgttcacttcctatttttcaaccacatc------------ggtaaatagtgcattgtgattggctg 31644693  T
Q  578 ctctttattcttgaagaatttttgatgttattttt 612  Q
    |||||||||||||||||||| ||||||||||||||    
T  31644692 ctctttattcttgaagaattattgatgttattttt 31644658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 595
Target Start/End: Original strand, 16516972 - 16517078
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattct 588  Q
    |||||| ||||  ||||||||||||||||||  ||||| |||||| ||| |||| || ||||| ||||  |||| ||| ||||||  |||||||||||||    
T  16516972 aagttttaatttcatgatttatttgttcactctctattattcagcaacatctccgtgtattgttgcaagcagtgaattatgattgactgctctttattct 16517071  T
Q  589 tgaagaa 595  Q
    | |||||    
T  16517072 taaagaa 16517078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 534 - 591
Target Start/End: Complemental strand, 42148956 - 42148899
Alignment:
Q  534 cacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttga 591  Q
    |||||||||||||||| || |||||||| |||||||||||  |||| |||||||||||    
T  42148956 cacacctccttgaattatgtcaaatagtacattgtgattgagtgctatttattcttga 42148899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 587 - 636
Target Start/End: Original strand, 6614384 - 6614433
Alignment:
Q  587 cttgaagaatttttgatgttatttttctagagacatagcactgctcattc 636  Q
    |||||| |||| |||||| |||||||| ||||| ||||||||||||||||    
T  6614384 cttgaataattcttgatgctatttttcaagagatatagcactgctcattc 6614433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 4e-49; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 496 - 619
Target Start/End: Complemental strand, 39112784 - 39112661
Alignment:
Q  496 aattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttgaagaa 595  Q
    ||||| ||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  39112784 aattggatgatttatttgttcactttctatttttcagccgcacctccttgaattatggcaaatagtgcattgtgattggttgctctttatttttgaagaa 39112685  T
Q  596 tttttgatgttatttttctagaga 619  Q
    || |||||||||||||||||||||    
T  39112684 ttcttgatgttatttttctagaga 39112661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 460 - 610
Target Start/End: Original strand, 36473076 - 36473226
Alignment:
Q  460 catcaagaattttttcgaacacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaata 559  Q
    ||||||||||||||    ||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  36473076 catcaagaatttttcaagacacaattggtaagttttaattgcatgatttatttgttcacttcctatttttcagccacacctccttaaattgtgtcaaata 36473175  T
Q  560 gtgcattgtgattggttgctctttattcttgaagaatttttgatgttattt 610  Q
    ||| | ||||||||  |||||||||||||||||||||| ||||||||||||    
T  36473176 gtgtactgtgattgactgctctttattcttgaagaattcttgatgttattt 36473226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 461 - 619
Target Start/End: Complemental strand, 29314170 - 29314012
Alignment:
Q  461 atcaagaattttttcgaacacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatag 560  Q
    |||||||||||||    ||||||||| ||||||| ||||| || |||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||    
T  29314170 atcaagaatttttcaagacacagttggtaagttttaattgcattatttatttgtccactttctatttttcagtcacacctccttaaattgtggcaaatag 29314071  T
Q  561 tgcattgtgattggttgctctttattcttgaagaatttttgatgttatttttctagaga 619  Q
    |||||||||||||  | |||||||||||| || |||| |||||||||||||||||||||    
T  29314070 tgcattgtgattgacttctctttattcttaaacaattcttgatgttatttttctagaga 29314012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 480 - 632
Target Start/End: Complemental strand, 4851885 - 4851733
Alignment:
Q  480 acagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgct 579  Q
    |||| ||| |||||| ||||| |||||||||||||| | |||||||||||||||||||| ||||| |||||||| |||||||||||| ||||||  ||||    
T  4851885 acagctgacaagttttaattgcatgatttatttgtttatttcctatttttcagccacacttccttaaattgtggaaaatagtgcattatgattgactgct 4851786  T
Q  580 ctttattcttgaagaatttttgatgttatttttctagagacatagcactgctc 632  Q
    |||||||||| || |||| ||||||||||||||||||||| |||||| |||||    
T  4851785 ctttattcttaaaaaattcttgatgttatttttctagagatatagcattgctc 4851733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 459 - 635
Target Start/End: Original strand, 15561940 - 15562116
Alignment:
Q  459 gcatcaagaattttttcgaacacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaat 558  Q
    |||||||||||||||    | |||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15561940 gcatcaagaatttttcaagatacagttggcaagttttaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaat 15562039  T
Q  559 agtgcattgtgattggttgctctttattcttgaagaatttttgatgttatttttctagagacatagcactgctcatt 635  Q
    | ||||||  |||||  || | ||||||||| ||   ||||||||||||||||||| |||| |||| | ||||||||    
T  15562040 aatgcattacgattgactgttatttattcttaaaatttttttgatgttatttttcttgagatatagaattgctcatt 15562116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 487 - 626
Target Start/End: Complemental strand, 34392253 - 34392114
Alignment:
Q  487 ataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttatt 586  Q
    |||||||| ||||| |||||||||||||||||||   ||||||||||||||||| ||| |||||||||||||||| |||||||||||  |||||||||||    
T  34392253 ataagttttaattgcatgatttatttgttcacttttcatttttcagccacaccttcttaaattgtggcaaatagtacattgtgattgagtgctctttatt 34392154  T
Q  587 cttgaagaatttttgatgttatttttctagagacatagca 626  Q
    |||||| |||| |||||||||||||| |||||| ||||||    
T  34392153 cttgaaaaattcttgatgttatttttttagagatatagca 34392114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 489 - 635
Target Start/End: Complemental strand, 41322672 - 41322526
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattct 588  Q
    |||||| ||||| |||||||| ||||| ||||||||||||||  ||||||||||||||||| |  ||||||||||||||||||||  |||||||||||||    
T  41322672 aagttttaattgcatgatttaattgttaacttcctatttttctaccacacctccttgaattttcacaaatagtgcattgtgattgactgctctttattct 41322573  T
Q  589 tgaagaatttttgatgttatttttctagagacatagcactgctcatt 635  Q
    ||||||||| |||||||||||||| || ||| |||||| ||||||||    
T  41322572 tgaagaattcttgatgttatttttttaaagatatagcattgctcatt 41322526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 495 - 632
Target Start/End: Complemental strand, 8551626 - 8551489
Alignment:
Q  495 caattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttgaaga 594  Q
    |||||| |||||||||||||||| || |||||||| | ||||| |||||| |||||||||||| | ||||||||||||||||| |||||||||| |||||    
T  8551626 caattgcatgatttatttgttcattttctattttttaaccacatctcctttaattgtggcaaacaatgcattgtgattggttgttctttattctcgaaga 8551527  T
Q  595 atttttgatgttatttttctagagacatagcactgctc 632  Q
    ||| || ||||||||||| |||||| |||||| |||||    
T  8551526 attcttaatgttatttttttagagatatagcattgctc 8551489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 489 - 619
Target Start/End: Complemental strand, 1005732 - 1005602
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattct 588  Q
    |||||| ||||| || |||||||||||||||||||||||||||| |||||||| || ||||||| ||||| ||||||| | |||| || |||||||||||    
T  1005732 aagttttaattgcataatttatttgttcacttcctatttttcagtcacacctctttaaattgtgtcaaatggtgcattataattgattactctttattct 1005633  T
Q  589 tgaagaatttttgatgttatttttctagaga 619  Q
    | |||||||||| || |||||||||||||||    
T  1005632 ttaagaatttttaatattatttttctagaga 1005602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 460 - 613
Target Start/End: Original strand, 11653738 - 11653894
Alignment:
Q  460 catcaagaattttttcgaacacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaata 559  Q
    |||||||||||||||   |||| | ||| |||||| ||||  ||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||    
T  11653738 catcaagaattttttaagacacggctgacaagttttaattacatgatttatttgttcacttact-tttttaagccacacatccttgaattgtggcaaata 11653836  T
Q  560 gtgcattgtgattggttg----ctctttattcttgaagaatttttgatgttatttttc 613  Q
    || |||| |||||| |||    |||||||||||||||||||| |||||||||||||||    
T  11653837 gtacattatgattgattgactgctctttattcttgaagaattcttgatgttatttttc 11653894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 496 - 591
Target Start/End: Complemental strand, 11643419 - 11643324
Alignment:
Q  496 aattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttga 591  Q
    |||||||||||||||||||||||||| ||||||||| | |||| | ||| |||||||| |||||||||||||||||||  ||||||||||||||||    
T  11643419 aattgtatgatttatttgttcacttcgtatttttcaactacactttcttaaattgtggtaaatagtgcattgtgattgactgctctttattcttga 11643324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 511 - 632
Target Start/End: Complemental strand, 4794242 - 4794121
Alignment:
Q  511 ttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttgaagaatttttgatgttattt 610  Q
    |||||||||||||||||||  |||| |||||| |  |||||||||||||||||||||||||||| |||| ||||||||||||||  || ||||| |   |    
T  4794242 ttgttcacttcctattttttggccaaacctccatatattgtggcaaatagtgcattgtgattggctgctatttattcttgaagagattgtgatgcttcct 4794143  T
Q  611 ttctagagacatagcactgctc 632  Q
    ||||||||| ||||||||||||    
T  4794142 ttctagagatatagcactgctc 4794121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 489 - 597
Target Start/End: Complemental strand, 2001790 - 2001683
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattct 588  Q
    |||||| ||||  ||||||||||||||||||  ||||||| ||||||||||||||| ||||||||||||| ||| ||| ||||||  |||||||||||||    
T  2001790 aagttttaattacatgatttatttgttcactatctattttccagccacacctccttaaattgtggcaaatcgtgtatt-tgattgactgctctttattct 2001692  T
Q  589 tgaagaatt 597  Q
    |||||||||    
T  2001691 tgaagaatt 2001683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 497 - 603
Target Start/End: Original strand, 37919603 - 37919709
Alignment:
Q  497 attgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttgaagaat 596  Q
    |||| ||||||||||||||||||| ||||||||||  |||| |||||| ||||||| |||||| ||||||||||||| ||| | ||||||||| || |||    
T  37919603 attgcatgatttatttgttcacttactatttttcactcacatctccttaaattgtgacaaataatgcattgtgattgattgttatttattcttaaaaaat 37919702  T
Q  597 ttttgat 603  Q
    | |||||    
T  37919703 tcttgat 37919709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 496 - 595
Target Start/End: Complemental strand, 5549071 - 5548972
Alignment:
Q  496 aattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttgaagaa 595  Q
    ||||| |||||||||||||||||| |||||| |||||  ||||| || || ||| |||||| || || ||| ||||||  ||||||||||||||||||||    
T  5549071 aattgcatgatttatttgttcactccctattgttcagggacaccaccgtgtattatggcaagtactgaattatgattgactgctctttattcttgaagaa 5548972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 555 - 612
Target Start/End: Complemental strand, 33888942 - 33888885
Alignment:
Q  555 aaatagtgcattgtgattggttgctctttattcttgaagaatttttgatgttattttt 612  Q
    ||||| |||||||||||||  || ||||||||||| |||||||||| |||||||||||    
T  33888942 aaataatgcattgtgattgagtgttctttattcttaaagaatttttaatgttattttt 33888885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 586 - 634
Target Start/End: Complemental strand, 1196553 - 1196505
Alignment:
Q  586 tcttgaagaatttttgatgttatttttctagagacatagcactgctcat 634  Q
    |||| ||||||| ||||||||||||||||||||| |||||| |||||||    
T  1196553 tcttaaagaattcttgatgttatttttctagagatatagcattgctcat 1196505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 581 - 632
Target Start/End: Complemental strand, 3607087 - 3607036
Alignment:
Q  581 tttattcttgaagaatttttgatgttatttttctagagacatagcactgctc 632  Q
    ||||||||||||   |||||||||||||||||||||||| |||||| |||||    
T  3607087 tttattcttgaaatttttttgatgttatttttctagagatatagcattgctc 3607036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 534
Target Start/End: Complemental strand, 33888991 - 33888946
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagcc 534  Q
    |||||| ||||| || ||||||||||||||| ||||||||||||||    
T  33888991 aagttttaattgcataatttatttgttcactccctatttttcagcc 33888946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 586 - 626
Target Start/End: Complemental strand, 36473094 - 36473054
Alignment:
Q  586 tcttgaagaatttttgatgttatttttctagagacatagca 626  Q
    ||||||| |||| ||||||||||||||||||||| ||||||    
T  36473094 tcttgaaaaattcttgatgttatttttctagagaaatagca 36473054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 4e-49; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 489 - 628
Target Start/End: Original strand, 7646830 - 7646969
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattct 588  Q
    |||||| ||||| |||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  7646830 aagttttaattgcatgatttatttgttcatttcctatttttcagtcacacatccttgaattgtggcaaatagtgcattgtgattggctgctctttatttt 7646929  T
Q  589 tgaagaatttttgatgttatttttctagagacatagcact 628  Q
    | ||||||| ||||||||||||||||||||| ||||||||    
T  7646930 taaagaattcttgatgttatttttctagagatatagcact 7646969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 496 - 612
Target Start/End: Original strand, 12607123 - 12607239
Alignment:
Q  496 aattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttgaagaa 595  Q
    ||||| ||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||  ||||||||||||||||||||    
T  12607123 aattgcatgatttatttgttcactttctatttttcagtcacacctccttaaattgtggcaaatagtgcactgtgattgactgctctttattcttgaagaa 12607222  T
Q  596 tttttgatgttattttt 612  Q
    || ||||| || |||||    
T  12607223 ttcttgatttttttttt 12607239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 457 - 633
Target Start/End: Original strand, 29487539 - 29487715
Alignment:
Q  457 atgcatcaagaattttttcgaacacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaa 556  Q
    ||||||||||||||||| |  ||||||||| ||||| |  |||| |||||||||||||||||| ||||||||||||||||||||| || |||||||||||    
T  29487539 atgcatcaagaatttttccagacacagttggtaagtgttgattgcatgatttatttgttcactccctatttttcagccacacctcatttaattgtggcaa 29487638  T
Q  557 atagtgcattgtgattggttgctctttattcttgaagaatttttgatgttatttttctagagacatagcactgctca 633  Q
    |||||||| ||||||||  | |||||||||||| ||||  |  |||| ||| ||||||||| | |||||||| ||||    
T  29487639 atagtgcaatgtgattgactactctttattctttaagatgtcgtgatattacttttctagatatatagcactactca 29487715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 459 - 619
Target Start/End: Complemental strand, 25935681 - 25935521
Alignment:
Q  459 gcatcaagaattttttcgaacacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaat 558  Q
    |||||||||||||||    |||||| ||  |||||| ||||  ||||||||||  ||||||| ||||||||||||||||||||||| ||||||| |||||    
T  25935681 gcatcaagaatttttcaagacacagctggcaagttttaattacatgatttattctttcactttctatttttcagccacacctccttaaattgtgacaaat 25935582  T
Q  559 agtgcattgtgattggttgctctttattcttgaagaatttttgatgttatttttctagaga 619  Q
    ||| |||| ||||| | ||||||||||||||||| |||| || ||||||||||||||||||    
T  25935581 agtacattatgattagatgctctttattcttgaataattcttaatgttatttttctagaga 25935521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 506 - 593
Target Start/End: Complemental strand, 29637081 - 29636994
Alignment:
Q  506 tttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttgaag 593  Q
    ||||||||||||||| ||||||||||||   ||||||||| |||||||||||||||   |||||||||  ||||||||||||| ||||    
T  29637081 tttatttgttcactttctatttttcagctttacctccttgtattgtggcaaatagttagttgtgattgactgctctttattctagaag 29636994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 553 - 632
Target Start/End: Complemental strand, 17366929 - 17366850
Alignment:
Q  553 gcaaatagtgcattgtgattggttgctctttattcttgaagaatttttgatgttatttttctagagacatagcactgctc 632  Q
    |||||||||||| ||||||| | || |||||||||||||| |||| || ||||| |||||||||||| |||||| |||||    
T  17366929 gcaaatagtgcagtgtgattagctgttctttattcttgaaaaattcttaatgttgtttttctagagatatagcattgctc 17366850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 470 - 533
Target Start/End: Original strand, 28898419 - 28898482
Alignment:
Q  470 tttttcgaacacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagc 533  Q
    ||||||| |||||||| | |||||| ||||| |||||||||||||||||| |||||||| ||||    
T  28898419 tttttcggacacagttaaaaagttttaattgcatgatttatttgttcactccctattttacagc 28898482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 99; Significance: 2e-48; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 489 - 619
Target Start/End: Complemental strand, 492809 - 492679
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattct 588  Q
    |||||| ||||| || ||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||    
T  492809 aagttttaattgcataatttatttgttcatttcctatttttcagccacacctccttgaattgtgacaaattgtgcattgtgattggctgctctttattct 492710  T
Q  589 tgaagaatttttgatgttatttttctagaga 619  Q
    ||||||||| |||||||||||||||||||||    
T  492709 tgaagaattcttgatgttatttttctagaga 492679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 1e-46; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 489 - 632
Target Start/End: Complemental strand, 17611985 - 17611842
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattct 588  Q
    |||||| ||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||| | |||| |||||||||| ||||||||||    
T  17611985 aagttttaattgtatgatttatttattcacttcctattttttagccacatctccttgaattgtggcaaataattcattatgattggttgttctttattct 17611886  T
Q  589 tgaagaatttttgatgttatttttctagagacatagcactgctc 632  Q
    ||||||||| |||||||||||||||||| || |||||| |||||    
T  17611885 tgaagaattcttgatgttatttttctagcgatatagcattgctc 17611842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 486 - 632
Target Start/End: Complemental strand, 22327004 - 22326858
Alignment:
Q  486 gataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttat 585  Q
    ||||||||| ||||| ||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||| |||||||||||   ||||||| |    
T  22327004 gataagttttaattgcatgatttatttgttcactttctatttttcagtcacacctccctgaattgtggcaaatagtacattgtgattgacggctctttct 22326905  T
Q  586 tcttgaagaatttttgatgttatttttctagagacatagcactgctc 632  Q
    |||||||||||| ||||||||||||||||| ||| ||||||||||||    
T  22326904 tcttgaagaattcttgatgttatttttctaaagatatagcactgctc 22326858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 478 - 626
Target Start/End: Original strand, 27425798 - 27425946
Alignment:
Q  478 acacagttgataagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttg 577  Q
    |||||||||  |||||| ||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||  ||    
T  27425798 acacagttggcaagttttaattgcatgatttatttgttcacttcctatttttcaaccacaactccttgaattgtggcaaataatgcattgtgattgactg 27425897  T
Q  578 ctctttattcttgaagaatttttgatgttatttttctagagacatagca 626  Q
     ||||||||||| ||||||| ||||||||||||||||| ||| ||||||    
T  27425898 ttctttattctttaagaattcttgatgttatttttctaaagatatagca 27425946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 489 - 632
Target Start/End: Original strand, 23992006 - 23992149
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattct 588  Q
    |||||| ||||| ||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  23992006 aagttttaattgcatgatatttttgttcactttctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgataggctgctctttattct 23992105  T
Q  589 tgaagaatttttgatgttatttttctagagacatagcactgctc 632  Q
    ||||||||| |||||||||| ||| |||||| ||| || |||||    
T  23992106 tgaagaattcttgatgttatatttgtagagatataacattgctc 23992149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 502 - 617
Target Start/End: Complemental strand, 8307652 - 8307540
Alignment:
Q  502 atgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttgaagaatttttg 601  Q
    |||||||||||||||||||||||||||| ||||||||||   ||||||||||| ||||||||||| ||||||  |  ||||||||||| || |||| |||    
T  8307652 atgatttatttgttcacttcctatttttgagccacacct---tgaattgtggctaatagtgcattatgattgactcgtctttattcttaaaaaattcttg 8307556  T
Q  602 atgttatttttctaga 617  Q
    ||||||||||||||||    
T  8307555 atgttatttttctaga 8307540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 489 - 572
Target Start/End: Complemental strand, 42195520 - 42195437
Alignment:
Q  489 aagtttcaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgatt 572  Q
    |||||| ||||| |||||||||||||||||| | |||||||||| |||||||||||||||||||| ||||||||||||| ||||    
T  42195520 aagttttaattgcatgatttatttgttcactccttatttttcagacacacctccttgaattgtggtaaatagtgcattgagatt 42195437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 509 - 591
Target Start/End: Complemental strand, 25686488 - 25686406
Alignment:
Q  509 atttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttga 591  Q
    ||||||| |||||||||||| ||||||||||||||| |||||||| ||||||| |||| |||||| ||| |||||||||||||    
T  25686488 atttgtttacttcctattttccagccacacctccttaaattgtggtaaatagtacattatgattgattgttctttattcttga 25686406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 565 - 632
Target Start/End: Complemental strand, 19479508 - 19479441
Alignment:
Q  565 ttgtgattggttgctctttattcttgaagaatttttgatgttatttttctagagacatagcactgctc 632  Q
    ||||||||| || ||||||||| |||||||||||||||||||||||||||||||| |||||| |||||    
T  19479508 ttgtgattgattactctttatttttgaagaatttttgatgttatttttctagagatatagcattgctc 19479441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 516 - 594
Target Start/End: Original strand, 41405797 - 41405875
Alignment:
Q  516 cacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttgaaga 594  Q
    ||||| |||||||||| ||| ||||||||| ||||||||||||||||||||||||  |  | |||||||||||||||||    
T  41405797 cacttactatttttcaaccatacctccttgtattgtggcaaatagtgcattgtgaccgactcctctttattcttgaaga 41405875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 525 - 612
Target Start/End: Complemental strand, 642 - 556
Alignment:
Q  525 tttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttgaagaatttttgatgttattttt 612  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||    
T  642 tttttcagccacacctccttaaattgtg-caaatagtgcattgtgattgactgctctttattcttgaagaattcttgatgttattttt 556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 525 - 612
Target Start/End: Complemental strand, 8602 - 8516
Alignment:
Q  525 tttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttgaagaatttttgatgttattttt 612  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||    
T  8602 tttttcagccacacctccttaaattgtg-caaatagtgcattgtgattgactgctctttattcttgaagaattcttgatgttattttt 8516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 512 - 587
Target Start/End: Original strand, 19342 - 19417
Alignment:
Q  512 tgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattc 587  Q
    ||||||||||||||||||| || |||||||| || |||||||||| ||  | ||||||||||   |||||||||||    
T  19342 tgttcacttcctatttttctgctacacctccgtgtattgtggcaagtaacgtattgtgattgacagctctttattc 19417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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