View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19613_low_30 (Length: 267)
Name: NF19613_low_30
Description: NF19613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19613_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 39280704 - 39280933
Alignment:
| Q |
17 |
catcatcattattctctctctgcacatttccaatctcttcaaaacacaaaccaattccaccacttctccaaaaccaagacagcccagtttctccctctcc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39280704 |
catcatcattattctctctctgcacatttccaatctcttcaaaacacaaaccaattccaccacttctccaaaaccaagacagcccagtttctccctctcc |
39280803 |
T |
|
| Q |
117 |
ccaaattctttaattctaaccaaaacttcattcatcaccataaccccatcatcttccaccaaatccattatctcaacaaccaccttgttctgttcactca |
216 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39280804 |
ccaaattcattaactctaaccaaaacttcattcatcaccataaccccatcatcttccaccaaatccattatctcaacaaccaccttgttctgttcactca |
39280903 |
T |
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| Q |
217 |
ttggagtattaggttttttcccaattcctt |
246 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
39280904 |
ttggagtattaggttttttcccaattcctt |
39280933 |
T |
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