View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19613_low_32 (Length: 258)

Name: NF19613_low_32
Description: NF19613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19613_low_32
NF19613_low_32
[»] chr3 (11 HSPs)
chr3 (13-258)||(45708263-45708505)
chr3 (190-258)||(26244856-26244924)
chr3 (192-243)||(43804205-43804256)
chr3 (192-258)||(12088989-12089055)
chr3 (192-258)||(33140579-33140645)
chr3 (192-258)||(33140276-33140342)
chr3 (192-258)||(36012716-36012782)
chr3 (192-250)||(45708751-45708809)
chr3 (190-258)||(43031124-43031192)
chr3 (192-258)||(12089293-12089359)
chr3 (190-258)||(26244159-26244227)
[»] chr7 (7 HSPs)
chr7 (192-258)||(36642607-36642673)
chr7 (192-258)||(32047233-32047299)
chr7 (192-258)||(47360-47426)
chr7 (192-258)||(21297713-21297779)
chr7 (192-258)||(26073446-26073512)
chr7 (192-258)||(26097233-26097299)
chr7 (217-258)||(35316145-35316186)
[»] chr4 (8 HSPs)
chr4 (192-258)||(39864090-39864156)
chr4 (192-258)||(51103667-51103733)
chr4 (189-258)||(51103361-51103430)
chr4 (192-258)||(22886723-22886789)
chr4 (192-258)||(22938387-22938453)
chr4 (192-247)||(5808241-5808296)
chr4 (189-258)||(4892382-4892451)
chr4 (191-256)||(33611249-33611314)
[»] chr6 (3 HSPs)
chr6 (190-258)||(10388216-10388284)
chr6 (195-257)||(3605240-3605302)
chr6 (195-258)||(67642-67705)
[»] chr2 (3 HSPs)
chr2 (223-258)||(18144011-18144046)
chr2 (204-258)||(36937516-36937570)
chr2 (192-258)||(26407704-26407770)
[»] scaffold0024 (1 HSPs)
scaffold0024 (203-258)||(70865-70920)
[»] chr1 (3 HSPs)
chr1 (219-258)||(33321338-33321377)
chr1 (192-258)||(4067181-4067246)
chr1 (224-258)||(27134155-27134189)
[»] chr8 (1 HSPs)
chr8 (196-258)||(42027246-42027308)


Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 45708263 - 45708505
Alignment:
Q  13 aaaacatacacaacatacaatccctttaaacaccgatatttattttattctttattttgtgtgaggagaatttgaggaatgtgnnnnnnnnnnnngaggg 112  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||              ||||    
T  45708263 aaaacacacacaacatacaatccctttaaacacagatatttattttattctttattttgtgtgaggagaatttgaggaatgtttttttttttttttaggg 45708362  T
Q  113 aatttgaggaatgtgatgtgatatggaatgaaatacttgttggcaaatgcatgtataaaatatgtaagagataaatttcgagtaaatcattaaattggtc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||    
T  45708363 aatttgaggaatgtgatgtgatatggaatgaaatacttgttggcaaatgcatgtataaaatatgtaagagattaatttcgagtaaatcaccaaattggtc 45708462  T
Q  213 cttatctttgcaccaaatttttaaattggtctctgactctattaat 258  Q
    ||||||   | ||||||||||||||||||||||| |||||||||||    
T  45708463 cttatc---gtaccaaatttttaaattggtctctaactctattaat 45708505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 26244856 - 26244924
Alignment:
Q  190 tcgagtaaatcattaaattggtccttatctttgcaccaaatttttaaattggtctctgactctattaat 258  Q
    |||||||||| ||||||||||||  | |||||| ||||||||||||||||||||  |||||||||||||    
T  26244856 tcgagtaaattattaaattggtcagtgtctttgtaccaaatttttaaattggtccatgactctattaat 26244924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 43804256 - 43804205
Alignment:
Q  192 gagtaaatcattaaattggtccttatctttgcaccaaatttttaaattggtc 243  Q
    ||||||||||| ||||||||| || |||||||||||||||||||||||||||    
T  43804256 gagtaaatcatcaaattggtctttgtctttgcaccaaatttttaaattggtc 43804205  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 258
Target Start/End: Original strand, 12088989 - 12089055
Alignment:
Q  192 gagtaaatcattaaattggtccttatctttgcaccaaatttttaaattggtctctgactctattaat 258  Q
    |||||||||||||||||||||  | | |||| |||||||||||||||||||| |||||| |||||||    
T  12088989 gagtaaatcattaaattggtctatgtttttgtaccaaatttttaaattggtccctgactttattaat 12089055  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 33140645 - 33140579
Alignment:
Q  192 gagtaaatcattaaattggtccttatctttgcaccaaatttttaaattggtctctgactctattaat 258  Q
    |||||||||| ||||||||||||| |||||| |||||||  | |||||| |||||||||||||||||    
T  33140645 gagtaaatcactaaattggtccttgtctttgtaccaaatgctcaaattgatctctgactctattaat 33140579  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 258
Target Start/End: Original strand, 33140276 - 33140342
Alignment:
Q  192 gagtaaatcattaaattggtccttatctttgcaccaaatttttaaattggtctctgactctattaat 258  Q
    |||||||||||||| ||||||| | |||||| | |||||| ||||||| || |||||||||||||||    
T  33140276 gagtaaatcattaatttggtccatgtctttgtatcaaattcttaaattagtttctgactctattaat 33140342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 36012782 - 36012716
Alignment:
Q  192 gagtaaatcattaaattggtccttatctttgcaccaaatttttaaattggtctctgactctattaat 258  Q
    |||||||||| ||||||||||  | |||||| |||||||| | |||||| |||||||||||||||||    
T  36012782 gagtaaatcactaaattggtctctgtctttgtaccaaattatcaaattgatctctgactctattaat 36012716  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 45708809 - 45708751
Alignment:
Q  192 gagtaaatcattaaattggtccttatctttgcaccaaatttttaaattggtctctgact 250  Q
    |||||||||||||||||||||| | |||||| || ||| ||||||||||||| ||||||    
T  45708809 gagtaaatcattaaattggtccatgtctttgtactaaaattttaaattggtcactgact 45708751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 43031124 - 43031192
Alignment:
Q  190 tcgagtaaatcattaaattggtccttatctttgcaccaaatttttaaattggtctctgactctattaat 258  Q
    ||||||||||| |||||||| ||| |  ||||| | |||||||||||||||||| | ||||||||||||    
T  43031124 tcgagtaaatcgttaaattgatccatgactttgtatcaaatttttaaattggtcacggactctattaat 43031192  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 12089359 - 12089293
Alignment:
Q  192 gagtaaatcattaaattggtccttatctttgcaccaaatttttaaattggtctctgactctattaat 258  Q
    ||||||||||||||||| |||| | | |||| |||||||| ||||||||||   |||||||||||||    
T  12089359 gagtaaatcattaaatttgtccatgtttttgtaccaaattcttaaattggttcttgactctattaat 12089293  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 26244159 - 26244227
Alignment:
Q  190 tcgagtaaatcattaaattggtccttatctttgcaccaaatttttaaattggtctctgactctattaat 258  Q
    |||||||||| |||||||||||   | |||||| | ||||||||||||||| ||  |||||||||||||    
T  26244159 tcgagtaaattattaaattggttactgtctttgtaacaaatttttaaattgatccatgactctattaat 26244227  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 192 - 258
Target Start/End: Original strand, 36642607 - 36642673
Alignment:
Q  192 gagtaaatcattaaattggtccttatctttgcaccaaatttttaaattggtctctgactctattaat 258  Q
    |||||||||||||||||||||  |||||||| |||||||||| ||||||||| ||||||||||||||    
T  36642607 gagtaaatcattaaattggtctctatctttgtaccaaattttcaaattggtccctgactctattaat 36642673  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 258
Target Start/End: Original strand, 32047233 - 32047299
Alignment:
Q  192 gagtaaatcattaaattggtccttatctttgcaccaaatttttaaattggtctctgactctattaat 258  Q
    ||||||||||  |||||||||| |||||||| |||||||| | ||||||||||||||||||||||||    
T  32047233 gagtaaatcaccaaattggtccctatctttgtaccaaattctcaaattggtctctgactctattaat 32047299  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 47426 - 47360
Alignment:
Q  192 gagtaaatcattaaattggtccttatctttgcaccaaatttttaaattggtctctgactctattaat 258  Q
    |||||||| ||||||||||||  |||||||| |||||||| |||||||||||| || ||||||||||    
T  47426 gagtaaattattaaattggtctctatctttgtaccaaattattaaattggtctttgtctctattaat 47360  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 258
Target Start/End: Original strand, 21297713 - 21297779
Alignment:
Q  192 gagtaaatcattaaattggtccttatctttgcaccaaatttttaaattggtctctgactctattaat 258  Q
    ||||||| ||| |||||||||| | |||||| |||||||| |||| || ||||||||||||||||||    
T  21297713 gagtaaaccatcaaattggtccctgtctttgtaccaaattcttaatttagtctctgactctattaat 21297779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 26073512 - 26073446
Alignment:
Q  192 gagtaaatcattaaattggtccttatctttgcaccaaatttttaaattggtctctgactctattaat 258  Q
    ||||||| ||| |||||||||  | |||||| |||||||||| || |||||| ||||||||||||||    
T  26073512 gagtaaaccatcaaattggtcactgtctttgtaccaaattttcaatttggtccctgactctattaat 26073446  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 26097299 - 26097233
Alignment:
Q  192 gagtaaatcattaaattggtccttatctttgcaccaaatttttaaattggtctctgactctattaat 258  Q
    ||||||| ||| |||||||||  | |||||| |||||||||| || |||||| ||||||||||||||    
T  26097299 gagtaaaccatcaaattggtcactgtctttgtaccaaattttcaatttggtccctgactctattaat 26097233  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 35316186 - 35316145
Alignment:
Q  217 tctttgcaccaaatttttaaattggtctctgactctattaat 258  Q
    |||||| |||||||| ||||||||||| ||||||||||||||    
T  35316186 tctttgtaccaaattcttaaattggtccctgactctattaat 35316145  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 258
Target Start/End: Original strand, 39864090 - 39864156
Alignment:
Q  192 gagtaaatcattaaattggtccttatctttgcaccaaatttttaaattggtctctgactctattaat 258  Q
    |||||||||||||||||||||  | |||||| |||||||||||||||||||| | ||||||||||||    
T  39864090 gagtaaatcattaaattggtctctgtctttgtaccaaatttttaaattggtccccgactctattaat 39864156  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 51103733 - 51103667
Alignment:
Q  192 gagtaaatcattaaattggtccttatctttgcaccaaatttttaaattggtctctgactctattaat 258  Q
    ||||||| ||| |||||||||| |||||||| |||||||||| ||||||||| ||||||||||||||    
T  51103733 gagtaaaccatcaaattggtccctatctttgtaccaaattttcaaattggtcactgactctattaat 51103667  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 51103361 - 51103430
Alignment:
Q  189 ttcgagtaaatcattaaattggtccttatctttgcaccaaatttttaaattggtctctgactctattaat 258  Q
    ||||||||||||| ||||||||||  | |||||| |||||||| | ||||||||| ||||||||||||||    
T  51103361 ttcgagtaaatcactaaattggtctctgtctttgtaccaaattctcaaattggtccctgactctattaat 51103430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 22886789 - 22886723
Alignment:
Q  192 gagtaaatcattaaattggtccttatctttgcaccaaatttttaaattggtctctgactctattaat 258  Q
    ||||||||||   |||||||  ||||||||| | ||||||||||||||||||| |||||||||||||    
T  22886789 gagtaaatcaccgaattggtatttatctttgtatcaaatttttaaattggtctttgactctattaat 22886723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 22938453 - 22938387
Alignment:
Q  192 gagtaaatcattaaattggtccttatctttgcaccaaatttttaaattggtctctgactctattaat 258  Q
    ||||||||||   |||||||  ||||||||| | ||||||||||||||||||| |||||||||||||    
T  22938453 gagtaaatcaccgaattggtatttatctttgtatcaaatttttaaattggtctttgactctattaat 22938387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 5808296 - 5808241
Alignment:
Q  192 gagtaaatcattaaattggtccttatctttgcaccaaatttttaaattggtctctg 247  Q
    |||||||| | ||||||||||| |||||||| |||||||| | |||||||||||||    
T  5808296 gagtaaattactaaattggtccctatctttgtaccaaattctcaaattggtctctg 5808241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 4892382 - 4892451
Alignment:
Q  189 ttcgagtaaatcattaaattggtccttatctttgcaccaaatttttaaattggtctctgactctattaat 258  Q
    |||||||||| ||  |||||||||  | |||||| |||||||| ||||||| ||||| ||||||||||||    
T  4892382 ttcgagtaaaccaccaaattggtctctgtctttgtaccaaattcttaaattagtctccgactctattaat 4892451  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 33611314 - 33611249
Alignment:
Q  191 cgagtaaatcattaaattggtccttatctttgcaccaaatttttaaattggtctctgactctatta 256  Q
    ||||||||  ||||||||||||| | | |||| ||||||||||||| ||||||| | |||||||||    
T  33611314 cgagtaaacaattaaattggtccatttttttgtaccaaatttttaatttggtctataactctatta 33611249  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 10388216 - 10388284
Alignment:
Q  190 tcgagtaaatcattaaattggtccttatctttgcaccaaatttttaaattggtctctgactctattaat 258  Q
    |||||||||| ||||||||| || || |||||  |||||||||||||| ||||||||||||||||||||    
T  10388216 tcgagtaaattattaaattgatctttgtctttataccaaatttttaaactggtctctgactctattaat 10388284  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 3605302 - 3605240
Alignment:
Q  195 taaatcattaaattggtccttatctttgcaccaaatttttaaattggtctctgactctattaa 257  Q
    |||| |||| ||||||||| | |||||| || || ||||||||||||||||||||||||||||    
T  3605302 taaaccattgaattggtccctgtctttgtactaagtttttaaattggtctctgactctattaa 3605240  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 258
Target Start/End: Complemental strand, 67705 - 67642
Alignment:
Q  195 taaatcattaaattggtccttatctttgcaccaaatttttaaattggtctctgactctattaat 258  Q
    |||||||| ||||||||||   |||||| |||||||||| |||||||||||||| | |||||||    
T  67705 taaatcatcaaattggtcccagtctttgtaccaaattttcaaattggtctctgattttattaat 67642  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 223 - 258
Target Start/End: Complemental strand, 18144046 - 18144011
Alignment:
Q  223 caccaaatttttaaattggtctctgactctattaat 258  Q
    ||||||||||||||||||||||||||||||||||||    
T  18144046 caccaaatttttaaattggtctctgactctattaat 18144011  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 36937516 - 36937570
Alignment:
Q  204 aaattggtccttatctttgcaccaaatttttaaattggtctctgactctattaat 258  Q
    ||||| |||| |||||||| |||||||| | ||||||||||||||||||||||||    
T  36937516 aaattagtccctatctttgtaccaaattctcaaattggtctctgactctattaat 36937570  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 26407770 - 26407704
Alignment:
Q  192 gagtaaatcattaaattggtccttatctttgcaccaaatttttaaattggtctctgactctattaat 258  Q
    ||||||||||| || || |||| | |||||| |||||||||| | ||||||| ||||||||||||||    
T  26407770 gagtaaatcatcaatttagtccctgtctttgtaccaaattttcatattggtccctgactctattaat 26407704  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 258
Target Start/End: Complemental strand, 70920 - 70865
Alignment:
Q  203 taaattggtccttatctttgcaccaaatttttaaattggtctctgactctattaat 258  Q
    ||||||||||| | |||||| || ||||| | ||||||||||||||||||||||||    
T  70920 taaattggtccctgtctttgtactaaattctcaaattggtctctgactctattaat 70865  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 258
Target Start/End: Complemental strand, 33321377 - 33321338
Alignment:
Q  219 tttgcaccaaatttttaaattggtctctgactctattaat 258  Q
    |||| ||||||||||||||||||| |||||||||||||||    
T  33321377 tttgtaccaaatttttaaattggtttctgactctattaat 33321338  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 4067246 - 4067181
Alignment:
Q  192 gagtaaatcattaaattggtccttatctttgcaccaaatttttaaattggtctctgactctattaat 258  Q
    ||||||||||| |||||| |||   |||||| ||||||||||||||||||||  |||||||||||||    
T  4067246 gagtaaatcatcaaattgatcccc-tctttgtaccaaatttttaaattggtcattgactctattaat 4067181  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 258
Target Start/End: Complemental strand, 27134189 - 27134155
Alignment:
Q  224 accaaatttttaaattggtctctgactctattaat 258  Q
    ||||||||||||||||||||| |||||||||||||    
T  27134189 accaaatttttaaattggtctttgactctattaat 27134155  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 42027308 - 42027246
Alignment:
Q  196 aaatcattaaattggtccttatctttgcaccaaatttttaaattggtctctgactctattaat 258  Q
    |||||| |||||| ||| || |||||  || ||||| ||||||||||||||||||||||||||    
T  42027308 aaatcactaaattagtcattgtctttatacaaaattcttaaattggtctctgactctattaat 42027246  T

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