View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19613_low_33 (Length: 250)
Name: NF19613_low_33
Description: NF19613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19613_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 8450921 - 8451134
Alignment:
| Q |
13 |
aatataatagaacaaatcatatttaaggaaaaagtataatagaacaacataatgttatttggttgttgtcatgtgagcattaaacatatgatatgattgt |
112 |
Q |
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| T |
8450921 |
aatataatagaacaaatcatatttaaggaaaaagtataatagaacaacataatgttatttggttgttgtcatgtgagcattaaacatatgatatgattgt |
8451020 |
T |
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| Q |
113 |
atttattatttctattcggctcaatatcttattatgaccatgaaacatattctaaattttttaggtcaattaggtcaccatgataataatctaaatatat |
212 |
Q |
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||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8451021 |
atttattatttttatccggctcaatatcttattatgaccatgaaacatattctaaattttttaggtcaattaggtcaccatgataataatctaaatatat |
8451120 |
T |
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| Q |
213 |
catattatgtttga |
226 |
Q |
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|||||||||||||| |
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| T |
8451121 |
catattatgtttga |
8451134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 8428515 - 8428308
Alignment:
| Q |
14 |
atataatagaacaaatcatatttaaggaaaaagtataatagaacaacataatgttatttggttgttgtcatgtgagcattaaacatatgatatgattgta |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8428515 |
atatgatagaacaaatcatatttaaggaaaaagtataatagaacaacataatgttatttggttgttgtcatgtgagcattaaacatatgatatgattgta |
8428416 |
T |
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| Q |
114 |
tttattatttctattcggctcaatatcttattatgaccatgaaacatattctaaattttttaggtcaattaggtcaccatgataataatctaaatatatc |
213 |
Q |
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| T |
8428415 |
tttattatttttatccggctcaatatcttattatgaccatgaaacatattctaaattttttaggtcaattaggtcaccatga---taatctaaatgtatc |
8428319 |
T |
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| Q |
214 |
atattatgttt |
224 |
Q |
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| T |
8428318 |
atattatgttt |
8428308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 8437227 - 8437304
Alignment:
| Q |
41 |
aaaaagtataatagaacaacataatgttatttggtt-gttgtcatgtgagcattaaacatatgatatgattgtattta |
117 |
Q |
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| T |
8437227 |
aaaaaatataaaagaacaaaataatgttatttggttggttatcatgtgagtatcaaacatatgatatgattttattta |
8437304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 144
Target Start/End: Complemental strand, 8481176 - 8481083
Alignment:
| Q |
52 |
tagaacaacataatgttatttggttgttg-tcatgtgagcattaaacatatgatatgattgtatttattatttctattcggctcaatatcttat |
144 |
Q |
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| T |
8481176 |
tagaacaacatgatgttatttggttggtaattatgtgaacatcaaacacatgatataattgtatttatcattttaatccggctcaatatcttat |
8481083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 8413996 - 8414094
Alignment:
| Q |
13 |
aatataatagaacaaatcat-atttaaggaaaaagtataatagaacaacataatgttatttggttg-ttgtcatgtgagcattaaacatatgatatgatt |
110 |
Q |
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||||||||||||||||| || |||| ||||| ||||||||||||| ||||||||||||| ||| || ||||||||||||| ||||||||||||||| |
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| T |
8413996 |
aatataatagaacaaataatgttttaccaaaaaaatataatagaacaaaataatgttatttgattgattatcatgtgagcatt-cacatatgatatgatt |
8414094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 8408700 - 8408771
Alignment:
| Q |
47 |
tataatagaacaacataatgttatttggtt-gttgtcatgtgagcattaaacatatgatatgattgtatttat |
118 |
Q |
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||||||||||||| ||||| |||||||||| ||| | | |||||||| ||||| ||||||||||||||||||| |
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| T |
8408700 |
tataatagaacaaaataatattatttggttggttattacgtgagcatcaaaca-atgatatgattgtatttat |
8408771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 219 - 250
Target Start/End: Original strand, 8451140 - 8451171
Alignment:
| Q |
219 |
atgtttgatgagacaatatatactgatattga |
250 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
8451140 |
atgtttgatgagacaatatatactgatattga |
8451171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 8349982 - 8350028
Alignment:
| Q |
98 |
atatgatatgattgtatttattatttctattcggctcaatatcttat |
144 |
Q |
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| T |
8349982 |
atatgatatgattgtatttatcattttaatccggctcaatatcttat |
8350028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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