View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19613_low_34 (Length: 238)
Name: NF19613_low_34
Description: NF19613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19613_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 3416529 - 3416737
Alignment:
| Q |
19 |
acttcagcaatggtaggtgttgaagtagaacgaccactgaaaattcacttcattccttatctagcatctagccatatgatccctctttgtgatatagcag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
3416529 |
acttcagcaatggtaggtgttgaagtagaacgaccactgaaaattcacttcattccttatcttgcatctagccatatgatccctctttctgatatagcag |
3416628 |
T |
|
| Q |
119 |
ctatgtttgcatcccgtggccaacatgtcacaatcatcaccactccctccaattccaaattccttacaaaatctctatcttatgccgctcccttcttcct |
218 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||| |
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|
| T |
3416629 |
ctatgtttgcatcccatggccaacatgtcacaatcatcaccactccctccaatgccaaatttcttacaaaatctctttcttatgccgctcccttcttcct |
3416728 |
T |
|
| Q |
219 |
cagccttca |
227 |
Q |
| |
|
| ||||||| |
|
|
| T |
3416729 |
ccgccttca |
3416737 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 26 - 170
Target Start/End: Complemental strand, 13441379 - 13441235
Alignment:
| Q |
26 |
caatggtaggtgttgaagtagaacgaccactgaaaattcacttcattccttatctagcatctagccatatgatccctctttgtgatatagcagctatgtt |
125 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| |||||| ||||||| |
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| T |
13441379 |
caatggaaggtgttgaagtggaacgaccactgaaaattcacttcattccatatctagcatctggacatatgatccctctttgtgacatagcaactatgtt |
13441280 |
T |
|
| Q |
126 |
tgcatcccgtggccaacatgtcacaatcatcaccactccctccaa |
170 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
13441279 |
tgcatcccgtggccaacaagtcacaatcatcaccactccctccaa |
13441235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 21 - 211
Target Start/End: Complemental strand, 13462568 - 13462378
Alignment:
| Q |
21 |
ttcagcaatggtaggtgttgaagtagaacgaccactgaaaattcacttcattccttatctagcatctagccatatgatccctctttgtgatatagcagct |
120 |
Q |
| |
|
||||||||||| |||||| ||||| |||| |||||||||| | ||||||||||| |||||||||||| | |||||||||||||||| ||| |||||| | |
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|
| T |
13462568 |
ttcagcaatggaaggtgtagaagttgaacaaccactgaaactgcacttcattccatatctagcatctggacatatgatccctctttttgacatagcaatt |
13462469 |
T |
|
| Q |
121 |
atgtttgcatcccgtggccaacatgtcacaatcatcaccactccctccaattccaaattccttacaaaatctctatcttatgccgctccct |
211 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||||||||| | ||| |||||| |||||||| || | |||||||||| |
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|
| T |
13462468 |
atgtttgcatcccgtggccaacacgtcacagtcatcaccactccctccaacgtccaatcccttaccaaatctctctcatccgccgctccct |
13462378 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 194
Target Start/End: Complemental strand, 13449544 - 13449374
Alignment:
| Q |
24 |
agcaatggtaggtgttgaagtagaacgaccactgaaaattcacttcattccttatctagcatctagccatatgatccctctttgtgatatagcagctatg |
123 |
Q |
| |
|
|||||||| |||||||||||| |||| |||| ||||| || |||||||||| | ||| |||||| | |||||||||||||||| ||| |||||| ||||| |
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|
| T |
13449544 |
agcaatggaaggtgttgaagttgaacaaccattgaaagtttacttcattccatttcttgcatctggacatatgatccctctttttgacatagcaactatg |
13449445 |
T |
|
| Q |
124 |
tttgcatcccgtggccaacatgtcacaatcatcaccactccctccaattccaaattccttacaaaatctct |
194 |
Q |
| |
|
||||||||||||||||| || || ||| |||||||||||||| |||| | |||| |||||| |||||||| |
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|
| T |
13449444 |
tttgcatcccgtggccagcaagtaacagtcatcaccactcccgccaacgcaaaatcccttaccaaatctct |
13449374 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 22 - 171
Target Start/End: Complemental strand, 12541856 - 12541707
Alignment:
| Q |
22 |
tcagcaatggtaggtgttgaagtagaacgaccactgaaaattcacttcattccttatctagcatctagccatatgatccctctttgtgatatagcagcta |
121 |
Q |
| |
|
|||| ||||| |||||||||||| || |||||| | ||||||||||||||||| ||| |||||||| | ||||||||||||||||||||||||||| || |
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|
| T |
12541856 |
tcagaaatggaaggtgttgaagttgatcgaccattaaaaattcacttcattccatatttagcatctggacatatgatccctctttgtgatatagcaactt |
12541757 |
T |
|
| Q |
122 |
tgtttgcatcccgtggccaacatgtcacaatcatcaccactccctccaat |
171 |
Q |
| |
|
|||||||||| | ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12541756 |
tgtttgcatcacatggccaacaagtcacaatcatcaccactccctccaat |
12541707 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 34 - 194
Target Start/End: Complemental strand, 28386499 - 28386339
Alignment:
| Q |
34 |
ggtgttgaagtagaacgaccactgaaaattcacttcattccttatctagcatctagccatatgatccctctttgtgatatagcagctatgtttgcatccc |
133 |
Q |
| |
|
||||||||||| ||| ||||| ||||| ||||||||||||| |||| ||||||| | |||||||| || ||||||||||||||| || |||||||||| | |
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|
| T |
28386499 |
ggtgttgaagttgaaagaccattgaaacttcacttcattccgtatccagcatctggacatatgatgccactttgtgatatagcaactttgtttgcatcac |
28386400 |
T |
|
| Q |
134 |
gtggccaacatgtcacaatcatcaccactccctccaattccaaattccttacaaaatctct |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||| |||||| ||| |||| |
|
|
| T |
28386399 |
gtggccaacatgtcacaatcatcaccactccctccaatgcccaatcccttactaaaactct |
28386339 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 37 - 170
Target Start/End: Complemental strand, 48963451 - 48963318
Alignment:
| Q |
37 |
gttgaagtagaacgaccactgaaaattcacttcattccttatctagcatctagccatatgatccctctttgtgatatagcagctatgtttgcatcccgtg |
136 |
Q |
| |
|
|||||||| ||||||||| ||||| ||||||||||||| ||||| ||| || | |||||||| ||| | |||| ||||||||| ||||||| ||||||| |
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|
| T |
48963451 |
gttgaagttgaacgaccattgaaacttcacttcattccatatcttgcacctggtcatatgattcctttgggtgacatagcagctctgtttgcgtcccgtg |
48963352 |
T |
|
| Q |
137 |
gccaacatgtcacaatcatcaccactccctccaa |
170 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
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|
| T |
48963351 |
gccaacaagtcacaatcatcaccactccctccaa |
48963318 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 26 - 194
Target Start/End: Complemental strand, 48966508 - 48966340
Alignment:
| Q |
26 |
caatggtaggtgttgaagtagaacgaccactgaaaattcacttcattccttatctagcatctagccatatgatccctctttgtgatatagcagctatgtt |
125 |
Q |
| |
|
|||||| |||||||||| | |||||||||||||| ||||||||||||| ||||||||| | |||||||||||||| | ||||| |||||| |||| || |
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|
| T |
48966508 |
caatggaaggtgttgaaattaaacgaccactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactatctt |
48966409 |
T |
|
| Q |
126 |
tgcatcccgtggccaacatgtcacaatcatcaccactccctccaattccaaattccttacaaaatctct |
194 |
Q |
| |
|
|||||| | ||||||||| ||||| |||||||| |||||||| || |||| |||||| | |||||||| |
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|
| T |
48966408 |
tgcatctcatggccaacaagtcaccatcatcacaactccctctaacgccaacttcctttccaaatctct |
48966340 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 227
Target Start/End: Complemental strand, 48959322 - 48959119
Alignment:
| Q |
24 |
agcaatggtaggtgttgaagtagaacgaccactgaaaattcacttcattccttatctagcatctagccatatgatccctctttgtgatatagcagctatg |
123 |
Q |
| |
|
|||||||| |||||||||||| || |||| ||||| ||||||||||||| |||| |||| || | ||||||||||| | ||||| |||||| || || |
|
|
| T |
48959322 |
agcaatggaaggtgttgaagttgatagacctatgaaacttcacttcattccatatccagcacctgggcatatgatccccatgtgtgacatagcaactctg |
48959223 |
T |
|
| Q |
124 |
tttgcatcccgtggccaacatgtcacaatcatcaccactccctccaattccaaattccttacaaaatctctatcttatgccgctcccttcttcctcagcc |
223 |
Q |
| |
|
|||||||||| ||||||||| || ||||||||||||||||||||||| ||| | ||| |||| |||||||| || || | ||||||||||||| ||| |
|
|
| T |
48959222 |
tttgcatcccatggccaacaagtgacaatcatcaccactccctccaactcccacttctttaccaaatctctctcaagtgttgatcccttcttcctccgcc |
48959123 |
T |
|
| Q |
224 |
ttca |
227 |
Q |
| |
|
|||| |
|
|
| T |
48959122 |
ttca |
48959119 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 170
Target Start/End: Original strand, 12482461 - 12482605
Alignment:
| Q |
26 |
caatggtaggtgttgaagtagaacgaccactgaaaattcacttcattccttatctagcatctagccatatgatccctctttgtgatatagcagctatgtt |
125 |
Q |
| |
|
|||||| |||||||||||| ||||||||| ||||| ||||||||||||| | || |||| || | |||||||||||| | || | || ||| || |||| |
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|
| T |
12482461 |
caatggaaggtgttgaagttgaacgaccattgaaacttcacttcattccatttccagcacctgggcatatgatccctatgtgcaagattgcaactctgtt |
12482560 |
T |
|
| Q |
126 |
tgcatcccgtggccaacatgtcacaatcatcaccactccctccaa |
170 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
12482561 |
tgcatcacgtggccatcatgtcacaatcatcaccactccttccaa |
12482605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 12589191 - 12589333
Alignment:
| Q |
24 |
agcaatggtaggtgttgaagtagaacgaccactgaaaattcacttcattccttatctagcatctagccatatgatccctctttgtgatatagcagctatg |
123 |
Q |
| |
|
||||||| ||| |||||| | |||| |||| | ||| ||||||||||||| |||||| || || | |||||||||||||| ||||| || ||| | || |
|
|
| T |
12589191 |
agcaatgaaaggcgttgaaattgaacaaccattaaaacttcacttcattccatatctatcacctgggcatatgatccctctatgtgacattgcaaccctg |
12589290 |
T |
|
| Q |
124 |
tttgcatcccgtggccaacatgtcacaatcatcaccactccct |
166 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
12589291 |
tttgcatcccgtggccaacaagtcacaatcaccaccactccct |
12589333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 12640539 - 12640631
Alignment:
| Q |
78 |
tctagcatctagccatatgatccctctttgtgatatagcagctatgtttgcatcccgtggccaacatgtcacaatcatcaccactccctccaa |
170 |
Q |
| |
|
||||||| || | |||||||| ||| | |||| ||||||||| |||||||||||| ||||||||| ||||| |||||||||||||||||||| |
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|
| T |
12640539 |
tctagcacctggtcatatgattcctttgggtgacatagcagctttgtttgcatcccatggccaacaagtcacgatcatcaccactccctccaa |
12640631 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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