View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19613_low_40 (Length: 206)
Name: NF19613_low_40
Description: NF19613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19613_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 1984457 - 1984271
Alignment:
| Q |
1 |
tcatcggttggatccggacctttggttataactcgttacacggaattgatgaatggaattatagattccgagaacgatgcaaagattctaagagaaaaag |
100 |
Q |
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| T |
1984457 |
tcatcggttggatcgggacctttggttataactcgttacacggaattgatgaatggaattatagattccgagaacgatgcaaagattctaagagaaaaag |
1984358 |
T |
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| Q |
101 |
ggattattctaaatcacttaaaaagtgataaagaagtggccaacatgtggaatggaatgagcaagtcattgagattgtcaagggtac |
187 |
Q |
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| T |
1984357 |
ggattattctaaatcacttaaagagtgatcaagaagtggctaacatgtggaatggaatgagcaagttattgagattgtcaagggtac |
1984271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 1977536 - 1977350
Alignment:
| Q |
1 |
tcatcggttggatccggacctttggttataactcgttacacggaattgatgaatggaattatagattccgagaacgatgcaaagattctaagagaaaaag |
100 |
Q |
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| T |
1977536 |
tcatcggttggatcgggacctttggttataactcgttacacagaattgatgaatggaatcatagactccgagaaagatgcaaagattctaagagaaaaag |
1977437 |
T |
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| Q |
101 |
ggattattctaaatcacttaaaaagtgataaagaagtggccaacatgtggaatggaatgagcaagtcattgagattgtcaagggtac |
187 |
Q |
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| T |
1977436 |
ggattattctaaatcacttaaagagtgatcaagaagtggctaacatgtggaatggaatgagcaagtcattgagattgtcaagggtac |
1977350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 1948870 - 1949055
Alignment:
| Q |
1 |
tcatcggttggatccggacctttggttataactcgttacacggaattgatgaatggaattatagattccgagaacgatgcaaagattctaagagaaaaag |
100 |
Q |
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| T |
1948870 |
tcatcggttggatcgggaccattggttataacacggtacaccgaattgatgaatggaattatagactcggaagatgatgcgaagattctaagagaaaaag |
1948969 |
T |
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| Q |
101 |
ggattattctaaatcacttaaaaagtgataaagaagtggccaacatgtggaatggaatgagcaagtcattgagattgtcaagggta |
186 |
Q |
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| T |
1948970 |
ggattattttaaatcacttgaaaagtgataaagaagttgctgatatgtggaatggaatgagcaagtcattgagattatcaagggta |
1949055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 160
Target Start/End: Original strand, 5625935 - 5626049
Alignment:
| Q |
46 |
ttgatgaatggaattatagattccgagaacgatgcaaagattctaagagaaaaagggattattctaaatcacttaaaaagtgataaagaagtggccaaca |
145 |
Q |
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| T |
5625935 |
ttgatgaatggaatcatagacactgaggaagatgcaaggattcttagagaaaaaggggttattttgaaccatttaaaaagtgatcaagaggtggctaatt |
5626034 |
T |
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| Q |
146 |
tgtggaatggaatga |
160 |
Q |
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| T |
5626035 |
tgtggaatggaatga |
5626049 |
T |
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