View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19613_low_5 (Length: 572)
Name: NF19613_low_5
Description: NF19613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19613_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 202 - 536
Target Start/End: Complemental strand, 45886745 - 45886413
Alignment:
| Q |
202 |
gtgcgctctttaaaatttgaatggaagtagtggctcataaaattcataatcgtgattaattgtggtcaattgatgattaataaatcgtgatgtcttggtt |
301 |
Q |
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| T |
45886745 |
gtgcgctattaaaaatttgaatgaaagtagtggctcataaaattcataatcgtgattaattgtggtcaattgatgattaataaatcgtgatatcttggtt |
45886646 |
T |
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| Q |
302 |
gaagaacatagttaatcgcattttatattgtattcaccatttaagttgtcgaattttgatgacaacattatgtgtcaaaataaaacaattctatgaaaca |
401 |
Q |
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| T |
45886645 |
gaagaacatagttaatcgcattttttattgtattcaccatttaagttgtcgaattttgatgacaacattatgtttcaaaataaaacagttctatgaaaca |
45886546 |
T |
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| Q |
402 |
atgatccaaaaagaatattttaaggtagcataattttagttaaaggcacattgtaatgatacaagctgacaataaaggttttttcttttaatgttgttga |
501 |
Q |
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| T |
45886545 |
atgatccaaaaagaatattttaaggtatcataattttagttaaaggcacattgtaatgatacaagccgacaataaaggttttttcttttaa--ttgttga |
45886448 |
T |
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| Q |
502 |
aatggcaacgtgaaaacaattgaagccgcgacaac |
536 |
Q |
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| T |
45886447 |
aatggcaacgtgaaaacaattgaagccgcgacaac |
45886413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 45886901 - 45886774
Alignment:
| Q |
19 |
aagataaatgatattttgagacaatttgacaacaacttaaatagttaatacaatttaaatatatggccgatatcaacgttatttttaggtgaata-ttga |
117 |
Q |
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| T |
45886901 |
aagataaatgatattttgagacaatttgacaacaacttaaatagttaatacaatttaaatatatggctgatttcaacgttatttttaggtgaatatttga |
45886802 |
T |
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| Q |
118 |
acttaagttgtagttaatgaatactatg |
145 |
Q |
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| T |
45886801 |
acttaagttgtagttaatgaatattatg |
45886774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 537 - 567
Target Start/End: Complemental strand, 895762 - 895732
Alignment:
| Q |
537 |
tgttgtataattagtcatgagaattatctac |
567 |
Q |
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| T |
895762 |
tgttgtataattagtcatgagaattatctac |
895732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 6856113 - 6856070
Alignment:
| Q |
41 |
aatttgacaacaacttaaatagttaatacaatttaaatatatgg |
84 |
Q |
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| T |
6856113 |
aatttgataacaatttaaatagttaacacaatttaaatatatgg |
6856070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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