View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19613_low_9 (Length: 489)
Name: NF19613_low_9
Description: NF19613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19613_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 458
Target Start/End: Complemental strand, 953217 - 952776
Alignment:
| Q |
18 |
aaagattcattttcctggtttgtttcaggttactgacagtgtgcgtgcatcagtgattaacgccacaaatcaggtgatctcagaagatgaaaatacc-at |
116 |
Q |
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| T |
953217 |
aaagattcatttttctggtttgtttcaggttactgacagtgtgcgtgcatcagtgattaacgccacaaatcaggtgatctcagaagatgaaaatacctat |
953118 |
T |
|
| Q |
117 |
ctcgttgtgcctttttgcgttgtggaatttaaagaggaaatgttctctttgctagcagataagtgtccaggttctaaaggtttcaacttgggattttacc |
216 |
Q |
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| T |
953117 |
ctcgttgtgcctttttgcgttgaggaatttaaagaggaaatgttctctttgctagcagataagtgtccaggttctaaaggtttcaacttgggattttacc |
953018 |
T |
|
| Q |
217 |
aacatttttggcagatatgcagttttgatatattctgggagtattgttattggcttacaaattttcaaattccagcatcattaaattctactaatatgac |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
953017 |
aacatttttggcagatatgcagttttgatatattctgggagtattgttattggcttacaaattttcaaatttcagcatcgttaaattctactaatatgac |
952918 |
T |
|
| Q |
317 |
actaatacctaaggggaacgagtggcgttatatgatgaattgtatcattattatactttgcaatgtcctttatgaagtaatgttaaaggtctttatgata |
416 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
952917 |
actaacacctaaggggaacgagtggcgttatatgatggattgtatcattattacactttgcaatctcctttatgaagtaatgttaaaggtctttatgata |
952818 |
T |
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| Q |
417 |
taattgattaggcctatctgaaagatgtaatgatgaagatga |
458 |
Q |
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| T |
952817 |
taattgattaggcctatctgaaagatgtaatgatgaagatga |
952776 |
T |
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