View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19614_high_2 (Length: 352)
Name: NF19614_high_2
Description: NF19614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19614_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 327
Target Start/End: Original strand, 18542528 - 18542836
Alignment:
| Q |
19 |
aagagaccctatggaaattcttgagcatgtaaagattgatgatgctcttcaatctccaatatcaacagttaaaaatgtttttactgattccaatgataat |
118 |
Q |
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| T |
18542528 |
aagagaccctatggaaatccttgagcatgtaaagattgatgatgctcttcaatctccaatatcaacagttaaaaatgtttttacagattccaatgataat |
18542627 |
T |
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| Q |
119 |
aatgagttaagtttcaacaaagaagagctgagaaaagttgaaaaacaacttagacttgtgtttgttgagttctaccagaaactgctccatctcaaagatt |
218 |
Q |
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| T |
18542628 |
aatcagttaagtttcaataaagaagagctgaaaaaagttgaaaaacaacttagacttgtgtttgttgagttctatcagaaactcctccatctcaaagatt |
18542727 |
T |
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| Q |
219 |
acaggtaataagcaaatcatatatggaatggaacctttcaatttcttaatgactttcctgttttgtgaaatcggtgttaccacgtacttatgtatgtttt |
318 |
Q |
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||||||||||| ||| ||||||||||||||||| ||||| ||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||||||||| |
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| T |
18542728 |
acaggtaataaacaactcatatatggaatggaagctttcgatttcttaatgacattcctattttgtgaaatcagtgttactacgtacttatgtatgtttt |
18542827 |
T |
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| Q |
319 |
atgcaaatt |
327 |
Q |
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| T |
18542828 |
atgcaaatt |
18542836 |
T |
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