View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19614_low_1 (Length: 974)

Name: NF19614_low_1
Description: NF19614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19614_low_1
NF19614_low_1
[»] chr3 (10 HSPs)
chr3 (15-274)||(39272704-39272963)
chr3 (361-639)||(39273006-39273276)
chr3 (931-974)||(2796172-2796215)
chr3 (644-716)||(39273353-39273426)
chr3 (931-974)||(40033848-40033891)
chr3 (937-974)||(19741284-19741321)
chr3 (938-974)||(34142610-34142646)
chr3 (936-974)||(40758502-40758540)
chr3 (928-974)||(42342781-42342827)
chr3 (937-974)||(33689381-33689418)
[»] chr4 (26 HSPs)
chr4 (928-974)||(50418658-50418704)
chr4 (930-974)||(7451826-7451870)
chr4 (934-974)||(10781876-10781916)
chr4 (930-974)||(55867506-55867550)
chr4 (936-974)||(13058035-13058073)
chr4 (936-974)||(24349672-24349710)
chr4 (932-974)||(24350824-24350866)
chr4 (936-974)||(24711472-24711510)
chr4 (936-974)||(50419029-50419067)
chr4 (932-974)||(51692911-51692953)
chr4 (937-974)||(10780712-10780749)
chr4 (937-974)||(10974321-10974358)
chr4 (937-974)||(23613308-23613345)
chr4 (937-974)||(24711110-24711147)
chr4 (937-974)||(48528484-48528521)
chr4 (929-974)||(49879198-49879243)
chr4 (938-974)||(7452195-7452231)
chr4 (938-974)||(23613670-23613706)
chr4 (931-974)||(44967430-44967473)
chr4 (937-971)||(5368946-5368980)
chr4 (936-974)||(34765772-34765810)
chr4 (940-974)||(44967071-44967105)
chr4 (937-974)||(13058374-13058411)
chr4 (937-974)||(18831348-18831385)
chr4 (941-974)||(37248597-37248630)
chr4 (937-974)||(46661306-46661343)
[»] scaffold0007 (2 HSPs)
scaffold0007 (934-974)||(1765-1805)
scaffold0007 (937-974)||(2133-2170)
[»] chr8 (16 HSPs)
chr8 (934-974)||(12198946-12198986)
chr8 (934-974)||(12443374-12443414)
chr8 (936-974)||(23663543-23663581)
chr8 (936-974)||(23663906-23663944)
chr8 (937-974)||(8316652-8316689)
chr8 (937-974)||(8316980-8317017)
chr8 (937-974)||(20386822-20386859)
chr8 (938-974)||(20385568-20385604)
chr8 (938-974)||(38956064-38956100)
chr8 (936-974)||(1425051-1425089)
chr8 (936-974)||(12273245-12273283)
chr8 (936-974)||(16388581-16388619)
chr8 (938-972)||(23698308-23698342)
chr8 (936-974)||(23698636-23698674)
chr8 (936-974)||(33357496-33357534)
chr8 (937-974)||(4995048-4995085)
[»] chr5 (21 HSPs)
chr5 (930-974)||(27587507-27587551)
chr5 (935-974)||(28770866-28770905)
chr5 (928-974)||(6150444-6150490)
chr5 (936-974)||(38475391-38475429)
chr5 (937-974)||(3528872-3528909)
chr5 (937-974)||(11761748-11761785)
chr5 (937-974)||(11762109-11762146)
chr5 (937-974)||(24547517-24547554)
chr5 (938-974)||(3529234-3529270)
chr5 (938-974)||(27587148-27587184)
chr5 (935-974)||(20814527-20814566)
chr5 (936-974)||(5993887-5993925)
chr5 (936-974)||(6150812-6150850)
chr5 (936-974)||(14194421-14194459)
chr5 (936-974)||(20840531-20840569)
chr5 (936-974)||(24547175-24547213)
chr5 (935-973)||(27937052-27937090)
chr5 (937-974)||(16157247-16157284)
chr5 (937-974)||(18247468-18247505)
chr5 (933-974)||(29646357-29646398)
chr5 (937-974)||(39453691-39453728)
[»] chr6 (12 HSPs)
chr6 (935-974)||(681120-681159)
chr6 (936-974)||(30337447-30337485)
chr6 (937-974)||(17734195-17734232)
chr6 (934-974)||(13379874-13379914)
chr6 (938-974)||(30337810-30337846)
chr6 (935-974)||(30726151-30726190)
chr6 (932-974)||(3059648-3059690)
chr6 (936-974)||(26463177-26463215)
chr6 (936-974)||(33647343-33647381)
chr6 (937-974)||(679865-679902)
chr6 (937-974)||(21628105-21628142)
chr6 (937-974)||(33517926-33517963)
[»] chr7 (17 HSPs)
chr7 (928-974)||(17102010-17102056)
chr7 (936-974)||(17102381-17102419)
chr7 (928-974)||(32298767-32298813)
chr7 (937-974)||(6253832-6253869)
chr7 (937-974)||(6571012-6571049)
chr7 (937-974)||(22871669-22871706)
chr7 (937-974)||(27991738-27991775)
chr7 (939-974)||(6253472-6253507)
chr7 (935-974)||(28469400-28469439)
chr7 (936-974)||(5457299-5457337)
chr7 (936-974)||(27396987-27397025)
chr7 (936-974)||(45010996-45011034)
chr7 (937-974)||(19204488-19204525)
chr7 (937-974)||(24389177-24389214)
chr7 (941-974)||(27992100-27992133)
chr7 (937-974)||(28469009-28469046)
chr7 (933-974)||(42731811-42731852)
[»] chr2 (11 HSPs)
chr2 (936-974)||(11163415-11163453)
chr2 (937-974)||(16099416-16099453)
chr2 (930-974)||(6657870-6657914)
chr2 (827-882)||(21744020-21744075)
chr2 (935-974)||(39423907-39423946)
chr2 (936-971)||(39498674-39498709)
chr2 (936-974)||(44045394-44045432)
chr2 (937-971)||(45556111-45556145)
chr2 (937-974)||(3555249-3555286)
chr2 (937-974)||(36755480-36755517)
chr2 (937-974)||(45556439-45556476)
[»] chr1 (17 HSPs)
chr1 (928-974)||(43759214-43759260)
chr1 (937-974)||(25647883-25647920)
chr1 (938-974)||(26024784-26024820)
chr1 (935-974)||(19515816-19515855)
chr1 (930-973)||(34464842-34464885)
chr1 (935-974)||(36694279-36694318)
chr1 (935-974)||(36710380-36710419)
chr1 (935-974)||(47999484-47999523)
chr1 (936-974)||(23209719-23209757)
chr1 (936-974)||(30711719-30711757)
chr1 (936-974)||(35473629-35473667)
chr1 (937-974)||(7820953-7820990)
chr1 (937-974)||(17661851-17661888)
chr1 (937-974)||(26024422-26024459)
chr1 (937-974)||(40772851-40772888)
chr1 (933-974)||(42533019-42533060)
chr1 (938-971)||(47999123-47999156)
[»] scaffold0020 (1 HSPs)
scaffold0020 (936-974)||(139670-139708)
[»] scaffold0707 (1 HSPs)
scaffold0707 (937-974)||(6471-6508)


Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-139; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 15 - 274
Target Start/End: Original strand, 39272704 - 39272963
Alignment:
Q  15 caatatcagtctctgccacagctggtggtgttatagcctcctctagcacagttttgaatgctacatgacccttcttatgatttcgtggacgatcatagcg 114  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39272704 caatatcagtctctgctacagctggtggtgttataggctcctctagcacagttttgaatgctacatgacccttcttatgatttcgtggacgatcatagcg 39272803  T
Q  115 tttccgaagcataggctcagttacttcatggacttggtaattgtaggagttggaaggacaccaaccgcgatatatgatgttttgtttttccatttcctat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39272804 tttccgaagcataggctcagttacttcatggacttggtaattgtaggagttggaaggacaccaaccgcgatatatgatgttttgtttttccatttcctat 39272903  T
Q  215 atatatggaattgaaagtgcccagttctgtttgtgaatggtgttgaaattgtgttcctac 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39272904 atatatggaattgaaagtgcccagttctgtttgtgaatggtgttgaaattgtgttcctac 39272963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 361 - 639
Target Start/End: Original strand, 39273006 - 39273276
Alignment:
Q  361 ttgagtatatatgtccattagttatatattctgtaatgatataaagtgattggataggatctaatacctctccctcctttttaccataaagtttaaacta 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  39273006 ttgagtatatatgtccattagttatatattctgtaatgatataaagtgattggataggatctaatacctctccctcctttttaccataaagttt------ 39273099  T
Q  461 actaattgaaataagatgaatatttgaggcatat-----tatggtatatatctgaagactgaaacaggaaaattcttagggatgggcatgaatacgaatc 555  Q
           |||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  39273100 -------gaaataagatgaatatttgaggcatattatattatggtatatatctgaagactgaaacaggaaaattctttgggatgggcatgaaaacgaatc 39273192  T
Q  556 catcactaccaccactgaatttgattcgtttagcatttttggtgatggtctaagaaaattatcaattctgtttttgcagggaat 639  Q
     ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  39273193 tatcactaccaccattgaatttgattcgtttagcatttttggtgatggtctaaggaaatgatcaattctgtttttgcagggaat 39273276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 931 - 974
Target Start/End: Original strand, 2796172 - 2796215
Alignment:
Q  931 aaatataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  2796172 aaatataggcttaaatatgtatttgatccttgcaattaggggtc 2796215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 644 - 716
Target Start/End: Original strand, 39273353 - 39273426
Alignment:
Q  644 ttattggaaacaagaatggtatatggaaa-ggaacttaattggaaatttttgacgtgacaaaattattttagac 716  Q
    |||||||| ||||||||||||||| |||| |||| ||||||||||| |||||| |  |||||||||||||||||    
T  39273353 ttattggacacaagaatggtatatagaaaaggaaattaattggaaacttttgaagccacaaaattattttagac 39273426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 931 - 974
Target Start/End: Complemental strand, 40033891 - 40033848
Alignment:
Q  931 aaatataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||||||||| |||| |||||||||||||||||||    
T  40033891 aaatataggcttaaatatgtatttcatccttgcaattaggggtc 40033848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 937 - 974
Target Start/End: Complemental strand, 19741321 - 19741284
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  19741321 aggcttaaatatgtatttgatccttgcaattaggggtc 19741284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 938 - 974
Target Start/End: Complemental strand, 34142646 - 34142610
Alignment:
Q  938 ggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||| ||||||||||||||||||||||||    
T  34142646 ggcttaaatatgtatttgatccttgcaattaggggtc 34142610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 936 - 974
Target Start/End: Complemental strand, 40758540 - 40758502
Alignment:
Q  936 taggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  40758540 taggcttaaatatgtatttcatccttgcaattaggggtc 40758502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 928 - 974
Target Start/End: Original strand, 42342781 - 42342827
Alignment:
Q  928 ataaaatataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||| |||||||||||||||| |||| |||||| ||||||||||||    
T  42342781 ataaattataggcttaaatatgtatttcatccttacaattaggggtc 42342827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 937 - 974
Target Start/End: Original strand, 33689381 - 33689418
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  33689381 aggcttaaatatgtatttcatccttgcaattaggggtc 33689418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 928 - 974
Target Start/End: Original strand, 50418658 - 50418704
Alignment:
Q  928 ataaaatataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  50418658 ataaaatataggcttaaatatgtatttgatccttgcaattaggggtc 50418704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 930 - 974
Target Start/End: Original strand, 7451826 - 7451870
Alignment:
Q  930 aaaatataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||    
T  7451826 aaaatttaggcttaaatatgtatttgatccttgcaattaggggtc 7451870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 934 - 974
Target Start/End: Complemental strand, 10781916 - 10781876
Alignment:
Q  934 tataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  10781916 tataggcttaaatatgtatttgatccttgcaattaggggtc 10781876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 930 - 974
Target Start/End: Complemental strand, 55867550 - 55867506
Alignment:
Q  930 aaaatataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||    
T  55867550 aaaatataggcttaaatatgtatttgatccctgcaattaggggtc 55867506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 936 - 974
Target Start/End: Original strand, 13058035 - 13058073
Alignment:
Q  936 taggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  13058035 taggcttaaatatgtatttgatccttgcaattaggggtc 13058073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 936 - 974
Target Start/End: Original strand, 24349672 - 24349710
Alignment:
Q  936 taggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  24349672 taggcttaaatatgtatttgatccttgcaattaggggtc 24349710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 932 - 974
Target Start/End: Complemental strand, 24350866 - 24350824
Alignment:
Q  932 aatataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||| ||||||||||||| ||||||||||||||||||||||||    
T  24350866 aataaaggcttaaatatgtatttgatccttgcaattaggggtc 24350824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 936 - 974
Target Start/End: Complemental strand, 24711510 - 24711472
Alignment:
Q  936 taggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  24711510 taggcttaaatatgtatttgatccttgcaattaggggtc 24711472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 936 - 974
Target Start/End: Complemental strand, 50419067 - 50419029
Alignment:
Q  936 taggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  50419067 taggcttaaatatgtatttgatccttgcaattaggggtc 50419029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 932 - 974
Target Start/End: Complemental strand, 51692953 - 51692911
Alignment:
Q  932 aatataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||||||| |||| |||||||||||||||||||    
T  51692953 aatataggcttaaatatgtatttcatccttgcaattaggggtc 51692911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 937 - 974
Target Start/End: Original strand, 10780712 - 10780749
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  10780712 aggcttaaatatgtatttgatccttgcaattaggggtc 10780749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 937 - 974
Target Start/End: Original strand, 10974321 - 10974358
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  10974321 aggcttaaatatgtatttgatccttgcaattaggggtc 10974358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 937 - 974
Target Start/End: Original strand, 23613308 - 23613345
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  23613308 aggcttaaatatgtatttgatccttgcaattaggggtc 23613345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 937 - 974
Target Start/End: Original strand, 24711110 - 24711147
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  24711110 aggcttaaatatgtatttgatccttgcaattaggggtc 24711147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 937 - 974
Target Start/End: Original strand, 48528484 - 48528521
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  48528484 aggcttaaatatgtatttgatccttgcaattaggggtc 48528521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 929 - 974
Target Start/End: Original strand, 49879198 - 49879243
Alignment:
Q  929 taaaatataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||| ||| ||||||||||| ||||||||||||||||||||||||    
T  49879198 taaaaaataagcttaaatatgtatttgatccttgcaattaggggtc 49879243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 938 - 974
Target Start/End: Complemental strand, 7452231 - 7452195
Alignment:
Q  938 ggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||| ||||||||||||||||||||||||    
T  7452231 ggcttaaatatgtatttgatccttgcaattaggggtc 7452195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 938 - 974
Target Start/End: Complemental strand, 23613706 - 23613670
Alignment:
Q  938 ggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||| ||||||||||||||||||||||||    
T  23613706 ggcttaaatatgtatttgatccttgcaattaggggtc 23613670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 931 - 974
Target Start/End: Complemental strand, 44967473 - 44967430
Alignment:
Q  931 aaatataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||| |||||||||||||| ||||||||||||||||||| ||||    
T  44967473 aaatctaggcttaaatatgtatttgatccttgcaattagaggtc 44967430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 937 - 971
Target Start/End: Original strand, 5368946 - 5368980
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggg 971  Q
    ||||||||||||| |||||||||||||||||||||    
T  5368946 aggcttaaatatgtatttgatccttgcaattaggg 5368980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 936 - 974
Target Start/End: Complemental strand, 34765810 - 34765772
Alignment:
Q  936 taggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  34765810 taggcttaaatatgtattttatccttgcaattaggggtc 34765772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 940 - 974
Target Start/End: Original strand, 44967071 - 44967105
Alignment:
Q  940 cttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||| ||||||||||||||||||||||||    
T  44967071 cttaaatatgtatttgatccttgcaattaggggtc 44967105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 937 - 974
Target Start/End: Complemental strand, 13058411 - 13058374
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  13058411 aggcttaaatatgtatttgatccttgcaataaggggtc 13058374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 937 - 974
Target Start/End: Original strand, 18831348 - 18831385
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  18831348 aggcttaaatatgtatttgatccttacaattaggggtc 18831385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 941 - 974
Target Start/End: Complemental strand, 37248630 - 37248597
Alignment:
Q  941 ttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||| ||||||||||||||||||||||||    
T  37248630 ttaaatatgtatttgatccttgcaattaggggtc 37248597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 937 - 974
Target Start/End: Complemental strand, 46661343 - 46661306
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  46661343 aggcttaaatatgtatttcatccttgcaattaggggtc 46661306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 934 - 974
Target Start/End: Original strand, 1765 - 1805
Alignment:
Q  934 tataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  1765 tataggcttaaatatgtatttgatccttgcaattaggggtc 1805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 937 - 974
Target Start/End: Complemental strand, 2170 - 2133
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  2170 aggcttaaatatgtatttgatccttgcaattaggggtc 2133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 934 - 974
Target Start/End: Original strand, 12198946 - 12198986
Alignment:
Q  934 tataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  12198946 tataggcttaaatatgtatttgatccttgcaattaggggtc 12198986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 934 - 974
Target Start/End: Original strand, 12443374 - 12443414
Alignment:
Q  934 tataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  12443374 tataggcttaaatatgtatttgatccttgcaattaggggtc 12443414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 936 - 974
Target Start/End: Original strand, 23663543 - 23663581
Alignment:
Q  936 taggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  23663543 taggcttaaatatgcatttcatccttgcaattaggggtc 23663581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 936 - 974
Target Start/End: Complemental strand, 23663944 - 23663906
Alignment:
Q  936 taggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  23663944 taggcttaaatatgtatttgatccttgcaattaggggtc 23663906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 937 - 974
Target Start/End: Original strand, 8316652 - 8316689
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||||||| |||||||||||||||||||    
T  8316652 aggcttaaatatgcatttcatccttgcaattaggggtc 8316689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 937 - 974
Target Start/End: Complemental strand, 8317017 - 8316980
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  8317017 aggcttaaatatgtatttgatccttgcaattaggggtc 8316980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 937 - 974
Target Start/End: Complemental strand, 20386859 - 20386822
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  20386859 aggcttaaatatgtatttgatccttgcaattaggggtc 20386822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 938 - 974
Target Start/End: Original strand, 20385568 - 20385604
Alignment:
Q  938 ggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||| ||||||||||||||||||||||||    
T  20385568 ggcttaaatatgtatttgatccttgcaattaggggtc 20385604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 938 - 974
Target Start/End: Complemental strand, 38956100 - 38956064
Alignment:
Q  938 ggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||| ||||||||||||||||||||||||    
T  38956100 ggcttaaatatgtatttgatccttgcaattaggggtc 38956064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 936 - 974
Target Start/End: Original strand, 1425051 - 1425089
Alignment:
Q  936 taggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  1425051 taggtttaaatatgtatttgatccttgcaattaggggtc 1425089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 936 - 974
Target Start/End: Complemental strand, 12273283 - 12273245
Alignment:
Q  936 taggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  12273283 taggtttaaatatgtatttgatccttgcaattaggggtc 12273245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 936 - 974
Target Start/End: Original strand, 16388581 - 16388619
Alignment:
Q  936 taggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  16388581 taggcttaaatatgtatttcatccttgcaattaggggtc 16388619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 938 - 972
Target Start/End: Original strand, 23698308 - 23698342
Alignment:
Q  938 ggcttaaatatgcatttgatccttgcaattagggg 972  Q
    |||||||||||| ||||||||||||||||||||||    
T  23698308 ggcttaaatatgtatttgatccttgcaattagggg 23698342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 936 - 974
Target Start/End: Complemental strand, 23698674 - 23698636
Alignment:
Q  936 taggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  23698674 taggcttaaatatgtatttgatccttgtaattaggggtc 23698636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 936 - 974
Target Start/End: Original strand, 33357496 - 33357534
Alignment:
Q  936 taggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  33357496 taggcttaaatatgtatttcatccttgcaattaggggtc 33357534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 937 - 974
Target Start/End: Complemental strand, 4995085 - 4995048
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  4995085 aggcttaaatatgtatttcatccttgcaattaggggtc 4995048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 930 - 974
Target Start/End: Complemental strand, 27587551 - 27587507
Alignment:
Q  930 aaaatataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||    
T  27587551 aaaatattggcttaaatatgtatttgatccttgcaattaggggtc 27587507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 935 - 974
Target Start/End: Original strand, 28770866 - 28770905
Alignment:
Q  935 ataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  28770866 ataggcttaaatatgtatttgatccttgcaattaggggtc 28770905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 928 - 974
Target Start/End: Original strand, 6150444 - 6150490
Alignment:
Q  928 ataaaatataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||    
T  6150444 ataaaataaaggcttaaatatgtatttcatccttgcaattaggggtc 6150490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 936 - 974
Target Start/End: Complemental strand, 38475429 - 38475391
Alignment:
Q  936 taggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  38475429 taggcttaaatatgcatttcatccttgcaattaggggtc 38475391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 937 - 974
Target Start/End: Original strand, 3528872 - 3528909
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  3528872 aggcttaaatatgtatttgatccttgcaattaggggtc 3528909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 937 - 974
Target Start/End: Original strand, 11761748 - 11761785
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  11761748 aggcttaaatatgtatttgatccttgcaattaggggtc 11761785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 937 - 974
Target Start/End: Complemental strand, 11762146 - 11762109
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  11762146 aggcttaaatatgtatttgatccttgcaattaggggtc 11762109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 937 - 974
Target Start/End: Complemental strand, 24547554 - 24547517
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  24547554 aggcttaaatatgtatttgatccttgcaattaggggtc 24547517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 938 - 974
Target Start/End: Complemental strand, 3529270 - 3529234
Alignment:
Q  938 ggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||| ||||||||||||||||||||||||    
T  3529270 ggcttaaatatgtatttgatccttgcaattaggggtc 3529234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 938 - 974
Target Start/End: Original strand, 27587148 - 27587184
Alignment:
Q  938 ggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||| ||||||||||||||||||||||||    
T  27587148 ggcttaaatatgtatttgatccttgcaattaggggtc 27587184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 935 - 974
Target Start/End: Complemental strand, 20814566 - 20814527
Alignment:
Q  935 ataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||||| |||| |||||||||||||||||||    
T  20814566 ataggcttaaatatgtatttcatccttgcaattaggggtc 20814527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 936 - 974
Target Start/End: Original strand, 5993887 - 5993925
Alignment:
Q  936 taggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  5993887 taggcttaaatatgtatttcatccttgcaattaggggtc 5993925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 936 - 974
Target Start/End: Complemental strand, 6150850 - 6150812
Alignment:
Q  936 taggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  6150850 taggcttaaatatgtatttcatccttgcaattaggggtc 6150812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 936 - 974
Target Start/End: Original strand, 14194421 - 14194459
Alignment:
Q  936 taggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  14194421 taggcttaaatatgtatttcatccttgcaattaggggtc 14194459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 936 - 974
Target Start/End: Original strand, 20840531 - 20840569
Alignment:
Q  936 taggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  20840531 taggcttaaatatgtatttcatccttgcaattaggggtc 20840569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 936 - 974
Target Start/End: Original strand, 24547175 - 24547213
Alignment:
Q  936 taggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||| | ||||||||||||||||||||||    
T  24547175 taggcttaaatatgtacttgatccttgcaattaggggtc 24547213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 935 - 973
Target Start/End: Original strand, 27937052 - 27937090
Alignment:
Q  935 ataggcttaaatatgcatttgatccttgcaattaggggt 973  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  27937052 ataggcttaaatatgtatttcatccttgcaattaggggt 27937090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 937 - 974
Target Start/End: Complemental strand, 16157284 - 16157247
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  16157284 aggcttaaatatgtatttcatccttgcaattaggggtc 16157247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 937 - 974
Target Start/End: Complemental strand, 18247505 - 18247468
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  18247505 aggcttaaatatgtatttcatccttgcaattaggggtc 18247468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 933 - 974
Target Start/End: Original strand, 29646357 - 29646398
Alignment:
Q  933 atataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||||||| |||| ||||||| |||||||||||    
T  29646357 atataggcttaaatatgtattttatccttgtaattaggggtc 29646398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 937 - 974
Target Start/End: Complemental strand, 39453728 - 39453691
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  39453728 aggcttaaatatgtatttcatccttgcaattaggggtc 39453691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000009; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 935 - 974
Target Start/End: Complemental strand, 681159 - 681120
Alignment:
Q  935 ataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  681159 ataggcttaaatatgtatttgatccttgcaattaggggtc 681120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 936 - 974
Target Start/End: Original strand, 30337447 - 30337485
Alignment:
Q  936 taggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  30337447 taggcttaaatatgtatttgatccttgcaattaggggtc 30337485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 937 - 974
Target Start/End: Original strand, 17734195 - 17734232
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  17734195 aggcttaaatatgtatttgatccttgcaattaggggtc 17734232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 934 - 974
Target Start/End: Complemental strand, 13379914 - 13379874
Alignment:
Q  934 tataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||||| ||||||||| ||||||||||||||    
T  13379914 tataggcttaaatatgtatttgatccctgcaattaggggtc 13379874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 938 - 974
Target Start/End: Complemental strand, 30337846 - 30337810
Alignment:
Q  938 ggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||| ||||||||||||||||||||||||    
T  30337846 ggcttaaatatgtatttgatccttgcaattaggggtc 30337810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 935 - 974
Target Start/End: Complemental strand, 30726190 - 30726151
Alignment:
Q  935 ataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||||| |||| |||||||||||||||||||    
T  30726190 ataggcttaaatatgtatttcatccttgcaattaggggtc 30726151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 932 - 974
Target Start/End: Complemental strand, 3059690 - 3059648
Alignment:
Q  932 aatataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||| ||||||||||||| |||| |||||||||||||||||||    
T  3059690 aataaaggcttaaatatgtatttcatccttgcaattaggggtc 3059648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 936 - 974
Target Start/End: Original strand, 26463177 - 26463215
Alignment:
Q  936 taggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  26463177 taggcttaaatatgtatttgatccctgcaattaggggtc 26463215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 936 - 974
Target Start/End: Complemental strand, 33647381 - 33647343
Alignment:
Q  936 taggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  33647381 taggcttaaatatgtatttcatccttgcaattaggggtc 33647343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 937 - 974
Target Start/End: Original strand, 679865 - 679902
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  679865 aggcttaaatatgtatttgatccttgcaattaagggtc 679902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 937 - 974
Target Start/End: Complemental strand, 21628142 - 21628105
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  21628142 aggcttaaatatgtatttcatccttgcaattaggggtc 21628105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 937 - 974
Target Start/End: Complemental strand, 33517963 - 33517926
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  33517963 aggcttaaatatgtatttcatccttgcaattaggggtc 33517926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 928 - 974
Target Start/End: Original strand, 17102010 - 17102056
Alignment:
Q  928 ataaaatataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||| | ||||||||||||| ||||||||||||||||||||||||    
T  17102010 ataaaaaaaaggcttaaatatgtatttgatccttgcaattaggggtc 17102056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 936 - 974
Target Start/End: Complemental strand, 17102419 - 17102381
Alignment:
Q  936 taggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  17102419 taggcttaaatatgtatttgatccttgcaattaggggtc 17102381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 928 - 974
Target Start/End: Original strand, 32298767 - 32298813
Alignment:
Q  928 ataaaatataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||| | ||||||||||||| ||||||||||||||||||||||||    
T  32298767 ataaaaaaaaggcttaaatatgtatttgatccttgcaattaggggtc 32298813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 937 - 974
Target Start/End: Complemental strand, 6253869 - 6253832
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  6253869 aggcttaaatatgtatttgatccttgcaattaggggtc 6253832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 937 - 974
Target Start/End: Original strand, 6571012 - 6571049
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  6571012 aggcttaaatatgtatttgatccttgcaattaggggtc 6571049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 937 - 974
Target Start/End: Complemental strand, 22871706 - 22871669
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  22871706 aggcttaaatatgtatttgatccttgcaattaggggtc 22871669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 937 - 974
Target Start/End: Original strand, 27991738 - 27991775
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  27991738 aggcttaaatatgtatttgatccttgcaattaggggtc 27991775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 939 - 974
Target Start/End: Original strand, 6253472 - 6253507
Alignment:
Q  939 gcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||| ||||||||||||||||||||||||    
T  6253472 gcttaaatatgtatttgatccttgcaattaggggtc 6253507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 935 - 974
Target Start/End: Complemental strand, 28469439 - 28469400
Alignment:
Q  935 ataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||||| |||| |||||||||||||||||||    
T  28469439 ataggcttaaatatgtatttcatccttgcaattaggggtc 28469400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 936 - 974
Target Start/End: Complemental strand, 5457337 - 5457299
Alignment:
Q  936 taggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  5457337 taggcttaaatatgtatttcatccttgcaattaggggtc 5457299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 936 - 974
Target Start/End: Complemental strand, 27397025 - 27396987
Alignment:
Q  936 taggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  27397025 taggcttaaatatgtatttcatccttgcaattaggggtc 27396987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 936 - 974
Target Start/End: Complemental strand, 45011034 - 45010996
Alignment:
Q  936 taggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  45011034 taggcttaaatatgtatttcatccttgcaattaggggtc 45010996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 937 - 974
Target Start/End: Original strand, 19204488 - 19204525
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  19204488 aggcttaaatatgtatttgatccttgaaattaggggtc 19204525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 937 - 974
Target Start/End: Complemental strand, 24389214 - 24389177
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  24389214 aggcttaaatatgtatttcatccttgcaattaggggtc 24389177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 941 - 974
Target Start/End: Complemental strand, 27992133 - 27992100
Alignment:
Q  941 ttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||| ||||||||||||||||||||||||    
T  27992133 ttaaatatgtatttgatccttgcaattaggggtc 27992100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 937 - 974
Target Start/End: Original strand, 28469009 - 28469046
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  28469009 aggcttaaatatgtatttcatccttgcaattaggggtc 28469046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 933 - 974
Target Start/End: Complemental strand, 42731852 - 42731811
Alignment:
Q  933 atataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||||||| |||| ||||||| |||||||||||    
T  42731852 atataggcttaaatatgtatttcatccttgtaattaggggtc 42731811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 936 - 974
Target Start/End: Complemental strand, 11163453 - 11163415
Alignment:
Q  936 taggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  11163453 taggcttaaatatgtatttgatccttgcaattaggggtc 11163415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 937 - 974
Target Start/End: Complemental strand, 16099453 - 16099416
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  16099453 aggcttaaatatgtatttgatccttgcaattaggggtc 16099416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 930 - 974
Target Start/End: Original strand, 6657870 - 6657914
Alignment:
Q  930 aaaatataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||| |||||||||||||| ||||||||||||||||| ||||||    
T  6657870 aaaatctaggcttaaatatgtatttgatccttgcaatttggggtc 6657914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 827 - 882
Target Start/End: Original strand, 21744020 - 21744075
Alignment:
Q  827 tgacgtacatgcaaaaattatgcgccaaaagaagagtggcaattgacttcatttgc 882  Q
    |||| ||||||||||||||  | |||||||||||||| ||||||| ||||||||||    
T  21744020 tgacatacatgcaaaaattcagtgccaaaagaagagtagcaattggcttcatttgc 21744075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 935 - 974
Target Start/End: Complemental strand, 39423946 - 39423907
Alignment:
Q  935 ataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||||| |||| |||||||||||||||||||    
T  39423946 ataggcttaaatatgtatttcatccttgcaattaggggtc 39423907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 936 - 971
Target Start/End: Complemental strand, 39498709 - 39498674
Alignment:
Q  936 taggcttaaatatgcatttgatccttgcaattaggg 971  Q
    |||||||||||||| |||||||||||||||||||||    
T  39498709 taggcttaaatatgtatttgatccttgcaattaggg 39498674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 936 - 974
Target Start/End: Complemental strand, 44045432 - 44045394
Alignment:
Q  936 taggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  44045432 taggcttaaatatgtatttgatccctgcaattaggggtc 44045394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 937 - 971
Target Start/End: Original strand, 45556111 - 45556145
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggg 971  Q
    ||||||||||||| |||||||||||||||||||||    
T  45556111 aggcttaaatatgtatttgatccttgcaattaggg 45556145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 937 - 974
Target Start/End: Original strand, 3555249 - 3555286
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  3555249 aggcttaaatatgtatttcatccttgcaattaggggtc 3555286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 937 - 974
Target Start/End: Complemental strand, 36755517 - 36755480
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  36755517 aggcttaaatatgtatttcatccttgcaattaggggtc 36755480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 937 - 974
Target Start/End: Complemental strand, 45556476 - 45556439
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  45556476 aggcttaaatatgtatttgatccttgtaattaggggtc 45556439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000004; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 928 - 974
Target Start/End: Complemental strand, 43759260 - 43759214
Alignment:
Q  928 ataaaatataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||| |||||||||||||| |||| |||||||||||||||||||    
T  43759260 ataaaatttaggcttaaatatgtatttcatccttgcaattaggggtc 43759214  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 937 - 974
Target Start/End: Original strand, 25647883 - 25647920
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  25647883 aggcttaaatatgtatttgatccttgcaattaggggtc 25647920  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 938 - 974
Target Start/End: Complemental strand, 26024820 - 26024784
Alignment:
Q  938 ggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||| ||||||||||||||||||||||||    
T  26024820 ggcttaaatatgtatttgatccttgcaattaggggtc 26024784  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 935 - 974
Target Start/End: Original strand, 19515816 - 19515855
Alignment:
Q  935 ataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||||| |||| |||||||||||||||||||    
T  19515816 ataggcttaaatatgtatttcatccttgcaattaggggtc 19515855  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 930 - 973
Target Start/End: Complemental strand, 34464885 - 34464842
Alignment:
Q  930 aaaatataggcttaaatatgcatttgatccttgcaattaggggt 973  Q
    ||||| |||||||||||||| |||| ||||||||||||||||||    
T  34464885 aaaatttaggcttaaatatgtatttcatccttgcaattaggggt 34464842  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 935 - 974
Target Start/End: Original strand, 36694279 - 36694318
Alignment:
Q  935 ataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||||| |||| |||||||||||||||||||    
T  36694279 ataggcttaaatatgtatttcatccttgcaattaggggtc 36694318  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 935 - 974
Target Start/End: Original strand, 36710380 - 36710419
Alignment:
Q  935 ataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||||| |||| |||||||||||||||||||    
T  36710380 ataggcttaaatatgtatttcatccttgcaattaggggtc 36710419  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 935 - 974
Target Start/End: Complemental strand, 47999523 - 47999484
Alignment:
Q  935 ataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||||| |||||||||||| |||||||||||    
T  47999523 ataggcttaaatatgtatttgatccttgtaattaggggtc 47999484  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 936 - 974
Target Start/End: Complemental strand, 23209757 - 23209719
Alignment:
Q  936 taggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  23209757 taggcttaaatatgtatttcatccttgcaattaggggtc 23209719  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 936 - 974
Target Start/End: Complemental strand, 30711757 - 30711719
Alignment:
Q  936 taggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  30711757 taggcttaaatatgtatttcatccttgcaattaggggtc 30711719  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 936 - 974
Target Start/End: Original strand, 35473629 - 35473667
Alignment:
Q  936 taggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  35473629 taggcttaaatatgtatttaatccttgcaattaggggtc 35473667  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 937 - 974
Target Start/End: Original strand, 7820953 - 7820990
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  7820953 aggcttaaatatgtatttcatccttgcaattaggggtc 7820990  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 937 - 974
Target Start/End: Original strand, 17661851 - 17661888
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  17661851 aggcttaaatatgtatttcatccttgcaattaggggtc 17661888  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 937 - 974
Target Start/End: Original strand, 26024422 - 26024459
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  26024422 aggcttaaatatgtatttgattcttgcaattaggggtc 26024459  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 937 - 974
Target Start/End: Complemental strand, 40772888 - 40772851
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  40772888 aggcttaaatatgtatttcatccttgcaattaggggtc 40772851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 933 - 974
Target Start/End: Original strand, 42533019 - 42533060
Alignment:
Q  933 atataggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||| ||||||||| |||| |||||||||||||||||||    
T  42533019 atataggtttaaatatgtatttcatccttgcaattaggggtc 42533060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 938 - 971
Target Start/End: Original strand, 47999123 - 47999156
Alignment:
Q  938 ggcttaaatatgcatttgatccttgcaattaggg 971  Q
    |||||||||||| |||||||||||||||||||||    
T  47999123 ggcttaaatatgtatttgatccttgcaattaggg 47999156  T

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Target: scaffold0020 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 936 - 974
Target Start/End: Original strand, 139670 - 139708
Alignment:
Q  936 taggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  139670 taggattaaatatgtatttgatccttgcaattaggggtc 139708  T

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Target: scaffold0707 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 937 - 974
Target Start/End: Complemental strand, 6508 - 6471
Alignment:
Q  937 aggcttaaatatgcatttgatccttgcaattaggggtc 974  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  6508 aggcttaaatatgtatttcatccttgcaattaggggtc 6471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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