View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19614_low_11 (Length: 211)
Name: NF19614_low_11
Description: NF19614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19614_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 9835990 - 9835803
Alignment:
| Q |
16 |
actttccacttgcaagctggttgcggatgcgttttgtggcctcaaccatggcagtgagggctgggttcacctcggtgtacttgcgagttttgagaccaca |
115 |
Q |
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| T |
9835990 |
actttccacttgcaagctggttgcggatgcgttttgtggcctcaaccatggcagtgagggctgggttcacctcggtgtacttgcgagttttgagaccaca |
9835891 |
T |
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| Q |
116 |
atcgggattgacccacaaaacgtttttctcaagcactgcaagcatcttgttgatcctctcagcaatttcttcagttggtgatattctt |
203 |
Q |
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| T |
9835890 |
atcgggattgacccacaaaacgtttttctcaagcactgcaagcatcttgttgatcctctcagcaatttcttcagttggtggtattctt |
9835803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 172
Target Start/End: Original strand, 33466453 - 33466554
Alignment:
| Q |
71 |
gagggctgggttcacctcggtgtacttgcgagttttgagaccacaatcgggattgacccacaaaacgtttttctcaagcactgcaagcatcttgttgatc |
170 |
Q |
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| T |
33466453 |
gagggcaggcttaacctctgtgtacttacgggtttttagcccacagtcagggttgacccacaaaacgttcttctcaaggacagcaagcatcttgttgatc |
33466552 |
T |
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| Q |
171 |
ct |
172 |
Q |
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| T |
33466553 |
ct |
33466554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 187
Target Start/End: Complemental strand, 35948503 - 35948400
Alignment:
| Q |
84 |
acctcggtgtacttgcgagttttgagaccacaatcgggattgacccacaaaacgtttttctcaagcactgcaagcatcttgttgatcctctcagcaattt |
183 |
Q |
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| T |
35948503 |
acctcagtgtattttcgcgttttaagaccacaatctgggttgacccaaaggatgttgctttcaagaacagcaagcatcttgttgattctatcagcaattt |
35948404 |
T |
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| Q |
184 |
cttc |
187 |
Q |
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|||| |
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| T |
35948403 |
cttc |
35948400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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