View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19614_low_4 (Length: 351)
Name: NF19614_low_4
Description: NF19614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19614_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 9835691 - 9835351
Alignment:
| Q |
1 |
tcagcatccatgtcaatgattgagtggatgatatcattgaagtgagagtagcacatgtgggtgtggatctgtcaattgttaacaatccaagatatgtaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9835691 |
tcagcatccatgtcaatgattgagtggatgatatcattgaagtgagagtagcacatgtgggtgtggatctgtcaattgttaacaatccaagatatgtaag |
9835592 |
T |
|
| Q |
101 |
ttaattaactatagatgtaatgtaacattttatgactttatcatatgaa-tttact---tcatacattagaatgg--nnnnnnnntctgatcatgttttg |
194 |
Q |
| |
|
|||||||||||||||| |||||||||| | ||||||| ||||||| |||||| ||||||||||||| || | |||||||||||| |
|
|
| T |
9835591 |
ttaattaactatagat-----gtaacattttttaactttataatatgaattttacttcgtcatacattagaagggaaaagaaaaattggatcatgttttg |
9835497 |
T |
|
| Q |
195 |
tattacaaagcatagacacggacaccagacacaacactgacacataaaatttgatcatgtgtgtgagccattgacacgtgactc-acaccgaccaatgat |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||| ||||||||||| | |||||||||||| |
|
|
| T |
9835496 |
tattacaaagcatagacacggacaccagacacaacactgatacgtaaaatctgatcatgtgtgtgagccatttacacgtgactctaacccgaccaatgat |
9835397 |
T |
|
| Q |
294 |
ttgaagtgtcagtgcttcatatttgtaaattagaagtacctgagta |
339 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
9835396 |
ttgaagtgtcagtgcttcgtatttgtaatttagaagtacctgagta |
9835351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 33466697 - 33466773
Alignment:
| Q |
1 |
tcagcatccatgtcaatgattgagtggatgatatcattgaagtgagagtagcacatgtgggtgtggatctgtcaatt |
77 |
Q |
| |
|
||||||||||| | |||||| || || ||||| || ||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
33466697 |
tcagcatccatattaatgatggaatgaatgatgtcgttgaagttggagtagcacatgtgagtgtggatctgtcaatt |
33466773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 35948269 - 35948202
Alignment:
| Q |
4 |
gcatccatgtcaatgattgagtggatgatatcattgaagtgagagtagcacatgtgggtgtggatctg |
71 |
Q |
| |
|
|||||||| || ||||||||||| ||||| |||||||||| |||||||||||||| ||||| ||||| |
|
|
| T |
35948269 |
gcatccatatctatgattgagtgaatgatgtcattgaagtttgagtagcacatgtgagtgtgaatctg |
35948202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University