View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19614_low_5 (Length: 326)
Name: NF19614_low_5
Description: NF19614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19614_low_5 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 16 - 326
Target Start/End: Complemental strand, 9835990 - 9835680
Alignment:
| Q |
16 |
actttccacttgcaagctggttgcggatgcgttttgtggcctcaaccatggcagtgagggctgggttcacctcggtgtacttgcgagttttgagaccaca |
115 |
Q |
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| T |
9835990 |
actttccacttgcaagctggttgcggatgcgttttgtggcctcaaccatggcagtgagggctgggttcacctcggtgtacttgcgagttttgagaccaca |
9835891 |
T |
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| Q |
116 |
atcgggattgacccacaaaacgtttttctcaagcactgcaagcatcttgttgatcctctcagcaatttcttcagttggtggtattcttggggagtgaatg |
215 |
Q |
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| T |
9835890 |
atcgggattgacccacaaaacgtttttctcaagcactgcaagcatcttgttgatcctctcagcaatttcttcagttggtggtattcttggggagtgaatg |
9835791 |
T |
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| Q |
216 |
tcataaactccagggccaattccagcgccatatttaactccatcgcggaacacccttaggagcttttcatcagaacgagaattctcaatggtgatcacat |
315 |
Q |
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| T |
9835790 |
tcataaactccagggccaattccagcgccatacttaactccatcgcggaacacccttaggagcttttcatcagaacgagaattctcaatggtgatcacat |
9835691 |
T |
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| Q |
316 |
cagcatccatg |
326 |
Q |
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| T |
9835690 |
cagcatccatg |
9835680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 71 - 325
Target Start/End: Original strand, 33466453 - 33466707
Alignment:
| Q |
71 |
gagggctgggttcacctcggtgtacttgcgagttttgagaccacaatcgggattgacccacaaaacgtttttctcaagcactgcaagcatcttgttgatc |
170 |
Q |
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| T |
33466453 |
gagggcaggcttaacctctgtgtacttacgggtttttagcccacagtcagggttgacccacaaaacgttcttctcaaggacagcaagcatcttgttgatc |
33466552 |
T |
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| Q |
171 |
ctctcagcaatttcttcagttggtggtattcttggggagtgaatgtcataaactccagggccaattccagcgccatatttaactccatcgcggaacaccc |
270 |
Q |
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| T |
33466553 |
ctgtcggcgatctcgtcggttggtgggattcttggggagtggatgtcatacacaccagggccaattccagcaccataaacaactccttcacggaagactg |
33466652 |
T |
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| Q |
271 |
ttaggagcttttcatcagaacgagaattctcaatggtgatcacatcagcatccat |
325 |
Q |
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| T |
33466653 |
atagaagcttttcgtcggaacgggagttctcaattgtgataacatcagcatccat |
33466707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 84 - 325
Target Start/End: Complemental strand, 35948503 - 35948262
Alignment:
| Q |
84 |
acctcggtgtacttgcgagttttgagaccacaatcgggattgacccacaaaacgtttttctcaagcactgcaagcatcttgttgatcctctcagcaattt |
183 |
Q |
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||||| ||||| || || ||||| ||||||||||| || |||||||| | | ||| | ||||| || ||||||||||||||||| || |||||||||| |
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| T |
35948503 |
acctcagtgtattttcgcgttttaagaccacaatctgggttgacccaaaggatgttgctttcaagaacagcaagcatcttgttgattctatcagcaattt |
35948404 |
T |
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| Q |
184 |
cttcagttggtggtattcttggggagtgaatgtcataaactccagggccaattccagcgccatatttaactccatcgcggaacacccttaggagcttttc |
283 |
Q |
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|||| || ||||| || ||||| |||||||| |||||||| ||||| ||||| ||||| ||||||||||| || || ||||| || || | |||||| |
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| T |
35948403 |
cttctgtgggtggaatccttggtgagtgaatatcataaacaccaggaccaatgccagcaccatatttaaccccctcacggaagacagataacaacttttc |
35948304 |
T |
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| Q |
284 |
atcagaacgagaattctcaatggtgatcacatcagcatccat |
325 |
Q |
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||| || | || |||||||| ||||||||||| |||||||| |
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| T |
35948303 |
atctgatctggagttctcaatagtgatcacatctgcatccat |
35948262 |
T |
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