View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19614_low_8 (Length: 250)
Name: NF19614_low_8
Description: NF19614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19614_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 13 - 244
Target Start/End: Complemental strand, 35036692 - 35036460
Alignment:
| Q |
13 |
aaaatcatcatcttcaagtgtttcaaagttgatagggtcataattttgcttcttattcctataaatcattataacaagaccc-ataatagtaatacctat |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35036692 |
aaaatcatcatcttcaagtgtttcaaagttgatagggtcataattttgcttcttattcctataaatcattataacaagaccccataatagtaatacctat |
35036593 |
T |
|
| Q |
112 |
tttgtagcctcaaattgtaacgacacaaggtgtgttattgcgtgatcaacaaaaaatgttctgagcaccataactcaagagaaatagccaaagcttttaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35036592 |
tttgtagcctcaaattgtaacgacacaaggtgtgttatagcgtgatcaacaaaaaatgttctgagcaccataactcaagagaaatagccaaagcttttaa |
35036493 |
T |
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| Q |
212 |
gaaaatgctatatggaaaagagagaaaatggtg |
244 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
35036492 |
gaaaatgctatatggaaaagagagaaaatggtg |
35036460 |
T |
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Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 20655321 - 20655251
Alignment:
| Q |
16 |
atcatcatcttcaagtgtttcaaagttgatagggtcataattttgcttcttattcctataaatcattataa |
86 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
20655321 |
atcatcctcttcaagtgtttcaaaattgatagggtcataattttgcttcttattcctataaattattataa |
20655251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 12037641 - 12037704
Alignment:
| Q |
23 |
tcttcaagtgtttcaaagttgatagggtcataattttgcttcttattcctataaatcattataa |
86 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
12037641 |
tcttcaagtgtttcaaaattgataaggtcataattttgcttcttattcctataaattattataa |
12037704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 26400737 - 26400811
Alignment:
| Q |
13 |
aaaatcatcatcttcaagtgtttcaaagttgatagggtcataattttgctt-cttattcctataaatcattataa |
86 |
Q |
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|||||||||||||| |||| |||||||||||||| ||| ||||||||| || ||||||||||||||||||||||| |
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| T |
26400737 |
aaaatcatcatctttaagtatttcaaagttgataaggttataattttgtttacttattcctataaatcattataa |
26400811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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