View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19615_high_10 (Length: 550)
Name: NF19615_high_10
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 459; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 17 - 535
Target Start/End: Original strand, 49425232 - 49425747
Alignment:
| Q |
17 |
cataggctctttgaatatagcggtgagatgttggaggatgttagaactttctcctctcttgaagaaccttttcctaagttcttaatcactccccgtccta |
116 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49425232 |
cataggttctttgaatatagcggtgagatgttggaggatgttagaactttctcctct--tgaagaaccttttcctaagttcttaatcactccccgtccta |
49425329 |
T |
|
| Q |
117 |
gtggtacttacttacatacttaataaaccaaatcttccggnnnnnnnncatttagtctataagtccttttgtaatggagcaatcaaaacattagtacaat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49425330 |
gtggtacttacttacatacttaataaaccaaatcttccggaaaaaaa-catttagtctataagtccttttgtaatggagcaatcaaaacattagtacaat |
49425428 |
T |
|
| Q |
217 |
caaaataaagacaaatacagattcctttgagaaataaaatatttgtttagtctttgtccatgcttctgtgttaaagagaaaagacaacatatgacaaaga |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49425429 |
caaaataaagacaaatacagattcctttgagaaataaaatatttgtttaatctttgtccatgcttctgtgttaaagagaaaagacaacatatgacaaaga |
49425528 |
T |
|
| Q |
317 |
tgaaaacataagttagcatagaactacaaagaacatggatctggcttattgaagtcatttgagagtccaagtcataaacaagcaaaaagaggttgatgag |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49425529 |
tgaaaacataagttagcatagaactacaaaaaacatcgatctggcttattgaagtcatttgagagtccaagtcataaacaagcaaaaagaggttgatgag |
49425628 |
T |
|
| Q |
417 |
ttttaagtataatattttcttaacatgtgtacaagctaaggttcacagttcaatccaccaaacccagcagttgcatgttagaaaatcaattgatcaacaa |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
49425629 |
ttttaagtataatattttcttaacatgtgtacaagctaaggttcacagttcaatccaccaaacccagcagttgcatgttagaaaatcaattgatgaacaa |
49425728 |
T |
|
| Q |
517 |
ctactcgaattcaaagggc |
535 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
49425729 |
ctactcgaattcaaagggc |
49425747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 225 - 297
Target Start/End: Original strand, 49444806 - 49444878
Alignment:
| Q |
225 |
agacaaatacagattcctttgagaaataaaatatttgtttagtctttgtccatgcttctgtgttaaagagaaa |
297 |
Q |
| |
|
||||||||| |||| ||||||| |||| || ||||||||||| |||||||||| ||||||||| ||||||||| |
|
|
| T |
49444806 |
agacaaataaagatacctttgaaaaatcaactatttgtttaggctttgtccatacttctgtgtcaaagagaaa |
49444878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 236 - 319
Target Start/End: Original strand, 49423259 - 49423341
Alignment:
| Q |
236 |
gattcctttgagaaataaaatatttgtttagtctttgtccatgcttctgtgttaaagagaaaagacaacatatgacaaagatga |
319 |
Q |
| |
|
||||||||| |||||| ||||||||||||| | ||||||||| |||||||| ||| |||||||| | || ||||||||||||| |
|
|
| T |
49423259 |
gattccttttagaaatcaaatatttgtttaat-tttgtccattcttctgtgccaaaaagaaaagatagcacatgacaaagatga |
49423341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University