View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19615_high_13 (Length: 520)
Name: NF19615_high_13
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_high_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 3 - 505
Target Start/End: Complemental strand, 13883839 - 13883316
Alignment:
| Q |
3 |
gatgtcgaagaatatggaaagttattgccatttttcatatgtcattcttcataaacaagcctattg---------------------atacctgttctgc |
81 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13883839 |
gatgttgaagaagatggaaagttattgccatttttcatatgtcattcttcataaacaagcctattgttatgattttccacattgttgatacctgttctgc |
13883740 |
T |
|
| Q |
82 |
actgcattagagtatgatgtcttactctgttggattgtgtttctgaatttctattctcgtannnnnnncttgagatatgttgcttcttgttacgtggtgt |
181 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| | |
|
|
| T |
13883739 |
actgcattagagtatgacgtcttactctgttggattgtgtttctgaatttctattctcgtatttttttcttgagacatgttgcttcttgttacgtggtat |
13883640 |
T |
|
| Q |
182 |
ggtagacttcttgtttcagataagaggcataagacaagctttgcaactgaagagttcatggcgctatcaaacattcgttaaatcagttcctcataatgtt |
281 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13883639 |
ggaagacttcttgtttcagataagaggcataagacaagctttgcatctgaagagttcatggcgctatcaaacattcgttaaatcagttcctcatattgtt |
13883540 |
T |
|
| Q |
282 |
ttccttcacacgacagaccgtacattctaagctgggtaagcattcgatattgtttatattgctaaatgtttttactgtgtgcttgacaccaaacttgcat |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13883539 |
ttccttcacacgacagaccgtacattctaagttgggtaagtattcgagattgtttatattgctaaatgtttttactgtgtgcttgacaccaaacttgcat |
13883440 |
T |
|
| Q |
382 |
ttaaacagatgaagaacacatactttcactagaggtcaattgttgtaattgatttcttcttgctaccatatctatattaaataaaaatgcgactaaatgt |
481 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13883439 |
tcaaacagatgaagaacacatactttgactagagatcaattgttgtaattgatttcttcttgctaccatatctatattaaataaaaatgcgactaaatgt |
13883340 |
T |
|
| Q |
482 |
ttatgtccattagtttgttcaatt |
505 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
13883339 |
ttatgtccattagtttgttcaatt |
13883316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 332 - 478
Target Start/End: Original strand, 14398075 - 14398221
Alignment:
| Q |
332 |
tgtttatattgctaaatgtttttactgtgtgcttgacaccaaacttgcatttaaacagatgaagaacacatactttcactagaggtcaattgttgtaatt |
431 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||| |||||| | |
|
|
| T |
14398075 |
tgtttatattgcttaatgtttttactgtgtgattgacaccaaaattgcatttaaacagatgcagaacacatacttccactagaggtcaattcttgtaact |
14398174 |
T |
|
| Q |
432 |
gatttcttcttgctaccatatctatattaaataaaaatgcgactaaa |
478 |
Q |
| |
|
|||||| |||| |||||| ||||| ||||||| ||||||| |||||| |
|
|
| T |
14398175 |
gatttcctcttactaccacatctagattaaattaaaatgcaactaaa |
14398221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 301 - 504
Target Start/End: Original strand, 14391891 - 14392092
Alignment:
| Q |
301 |
gtacattctaagctgggtaagcattcgatattgtttatattgctaaatgtttttactgtgtgcttgacaccaaacttgcatttaaacagatgaagaacac |
400 |
Q |
| |
|
||||||||| || |||||||| ||| || | ||||||||||||| ||||||||||||||| ||||||||||| ||||||| ||||||||| ||||||| |
|
|
| T |
14391891 |
gtacattctgagttgggtaagtatttgagagtgtttatattgcttaatgtttttactgtga--ttgacaccaaaattgcattcaaacagatgcagaacac |
14391988 |
T |
|
| Q |
401 |
atactttcactagaggtcaattgttgtaattgatttcttcttgctaccatatctatattaaataaaaatgcgactaaatgtttatgtccattagtttgtt |
500 |
Q |
| |
|
|| ||||||| |||||||||||||| || ||||||| |||| |||||| |||| |||||||||||||||| | |||| |||| || || || |||| || |
|
|
| T |
14391989 |
atgctttcacccgaggtcaattgttgcaagtgatttcctcttactaccacatctgtattaaataaaaatgcaattaaaagtttttgacccttggtttatt |
14392088 |
T |
|
| Q |
501 |
caat |
504 |
Q |
| |
|
|||| |
|
|
| T |
14392089 |
caat |
14392092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 352 - 471
Target Start/End: Complemental strand, 13853027 - 13852908
Alignment:
| Q |
352 |
tttactgtgtgcttgacaccaaacttgcatttaaacagatgaagaacacatactttcactagaggtcaattgttgtaattgatttcttcttgctaccata |
451 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||| | | ||||||||| ||| |
|
|
| T |
13853027 |
tttactgtgtgcatgacaccaaacttgcattcaaacagatgcagaacacatactttcactataggtcaattgttgtaattgaatacctcttgctacaata |
13852928 |
T |
|
| Q |
452 |
tctatattaaataaaaatgc |
471 |
Q |
| |
|
|||| |||||| |||||||| |
|
|
| T |
13852927 |
tctaaattaaacaaaaatgc |
13852908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 300 - 416
Target Start/End: Original strand, 14396168 - 14396284
Alignment:
| Q |
300 |
cgtacattctaagctgggtaagcattcgatattgtttatattgctaaatgtttttactgtgtgcttgacaccaaacttgcatttaaacagatgaagaaca |
399 |
Q |
| |
|
|||||||||| || |||||||| |||||| |||| ||||| || |||||| | ||||| |||||||||| ||||||||||||| ||||| ||| |||||| |
|
|
| T |
14396168 |
cgtacattctgagttgggtaagtattcgagattgattataatgttaaatgctcttactatgtgcttgacgccaaacttgcattgaaacaaatgcagaaca |
14396267 |
T |
|
| Q |
400 |
catactttcactagagg |
416 |
Q |
| |
|
||||||| ||| |||| |
|
|
| T |
14396268 |
tatactttgacttgagg |
14396284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 13857608 - 13857559
Alignment:
| Q |
87 |
attagagtatgatgtcttactctgttggattgtgtttctgaatttctatt |
136 |
Q |
| |
|
||||||| ||| ||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
13857608 |
attagagaatggtgtcttattctattggattgtgtttctgaatttctatt |
13857559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 13866127 - 13866076
Alignment:
| Q |
87 |
attagagtatgatgtcttactctgttggattgtgtttctgaatttctattct |
138 |
Q |
| |
|
||||||| ||||| ||||| ||| ||||||||||||||||||||| |||||| |
|
|
| T |
13866127 |
attagagaatgatttcttattcttttggattgtgtttctgaatttatattct |
13866076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 380
Target Start/End: Complemental strand, 16021677 - 16021598
Alignment:
| Q |
301 |
gtacattctaagctgggtaagcattcgatattgtttatattgctaaatgtttttactgtgtgcttgacaccaaacttgca |
380 |
Q |
| |
|
||||||||| || |||||||| ||||| |||||||| |||||| |||| ||||| |||||| |||| ||||||||||| |
|
|
| T |
16021677 |
gtacattctgagttgggtaagttttcgagattgtttacattgcttaatgattttattgtgtggttgatgccaaacttgca |
16021598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University