View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19615_high_14 (Length: 517)
Name: NF19615_high_14
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_high_14 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 13 - 517
Target Start/End: Original strand, 5279201 - 5279723
Alignment:
| Q |
13 |
aggaagtatataatcttcatttt-gcaactcagtattactctttaatattcttcttatgtagataacttttgagaattgattgagttttgttgcatgtat |
111 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
5279201 |
aggaagtatataatcttcatttttgtaactcagtactactctttaatattcttcttatgtaaataacttgtgagaga--attgagttttgttgcatgtat |
5279298 |
T |
|
| Q |
112 |
tgcttgctatttataagcacgaaa-attgaagtggtttgcatttgatctttaccttcattaatatttt----------------attaaataatgaacca |
194 |
Q |
| |
|
|||||||||||||||| | |||| |||||||||||||||||||||| |||||| |||||| | |||| |||||||||||||||| |
|
|
| T |
5279299 |
tgcttgctatttataacaatgaaacattgaagtggtttgcatttgatatttaccgtcattagtttttttttttttttttttcatattaaataatgaacca |
5279398 |
T |
|
| Q |
195 |
ttctttaacaactacatgtatacttgatctccaaaccaaagtcaagaccatttttaattgcatggccgtgtctacttgacattgaatttacaacctattc |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5279399 |
ttctttaacaactacatgtatacttgatctccaaaccaaagtcaagaccatttttaattgcatggccgtgtccacttgacattgaatttacaacctattc |
5279498 |
T |
|
| Q |
295 |
tcgtaatggtaattttataatgaaaatattttggggaaaatgaaattaagataagtttagaccaacac--tgtgtggcataaatggtatattctttggtg |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5279499 |
tcgtaatggtaattttataatgaaaatattttgggcaaaatgaaattaagataagtttagaccaacactgtgtgtggcataaatggtatattctttggtg |
5279598 |
T |
|
| Q |
393 |
tttatccattttatctaggtttgatcttcggctggtgcctatggcaaattatatgttaaaagaagtcaatctcctaaatgcatttaagttatttaagatt |
492 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
5279599 |
tttatccattttgtctaggtttgatcttcggctggtttctatggcaaattatatgttaaaagaagccaatctcctaaatgcatttcagttatttaagatg |
5279698 |
T |
|
| Q |
493 |
atttatctctcctttgtgcttagtg |
517 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
5279699 |
atttatctctcctttgtgcttagtg |
5279723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 383
Target Start/End: Original strand, 5287209 - 5287574
Alignment:
| Q |
13 |
aggaagtatataatcttcattttgcaactcagtattactctttaatattcttcttatgtagataacttttgagaattgattgagttttgttgcatgtatt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||| ||||| ||||||||||| |
|
|
| T |
5287209 |
aggaagtatataatcttcattttgcaactcagta---ctctttaatattcttcttatgtaaataacttatgagaattga----gttttcttgcatgtatt |
5287301 |
T |
|
| Q |
113 |
-gcttgctatttataagcacgaaa-attgaagtggtttgcatttgatctttaccttcattaatattttattaaataatgaaccattctttaacaactaca |
210 |
Q |
| |
|
|||||||||||||| | | |||| ||| ||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5287302 |
tgcttgctatttatatgaatgaaatattatagttgtttgcatttgatctttaccgtcattaatattttattaattaatgaaccattctttaacaactaca |
5287401 |
T |
|
| Q |
211 |
tgtatacttgatctccaaaccaaagtcaagaccatttttaattgcatggccgtgtctacttgacattgaatttacaacctattctcgtaatggtaatttt |
310 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5287402 |
tgtatacttgatctccaaaccgaagtcaagaccatatttaattgcattaccgtgttcacttgacattgaatttacaacctattctcgtaatggtaa-ttt |
5287500 |
T |
|
| Q |
311 |
ataa-tgaaaatattttggggaaaatgaaattaagataagtttagaccaacactgtgtggcataaatggtatat |
383 |
Q |
| |
|
|||| ||||||| ||||||| |||||||||||||||||||||||||||||| |||||||| || |||||||| |
|
|
| T |
5287501 |
ataattgaaaatgttttgggccgaatgaaattaagataagtttagaccaacacagtgtggcacaagtggtatat |
5287574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 5281886 - 5281650
Alignment:
| Q |
13 |
aggaagtatataatcttcattttgcaactcagtattactctttaatattcttcttatgtagataacttttgagaattgattgagttttgttgcatgtatt |
112 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||| |
|
|
| T |
5281886 |
aggaggtataaaatcttcattttgcaactcagtactaccctttaatattcttcttatgtaaataacttttgagaa----ttgagttttgttgcatatatt |
5281791 |
T |
|
| Q |
113 |
gcttgctatttataagcacgaaa-attgaagt-ggtttgcatttgatctttaccttcattaatattttattaaataatgaaccattctttaacaactaca |
210 |
Q |
| |
|
|||||||||||||||| | |||| ||||| || |||||||||||| ||||| |||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5281790 |
gcttgctatttataagaatgaaacattgatgtatttttgcatttgatatttactgtcattagttttttattaaataatgaaccattctttaacaactaca |
5281691 |
T |
|
| Q |
211 |
tgtatacttgatctccaaaccaaagtcaagaccatttttaa |
251 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5281690 |
tgtttgcttgatctccaaaccaaagtcaagaccatttttaa |
5281650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 361
Target Start/End: Complemental strand, 5281639 - 5281565
Alignment:
| Q |
287 |
acctattctcgtaatggtaattttataatgaaaatattttggggaaaatgaaattaagataagtttagaccaaca |
361 |
Q |
| |
|
|||| ||||| ||||||||||||| ||||| | ||||||||| ||||||||| ||| |||||||||||||||| |
|
|
| T |
5281639 |
acctgttctcttaatggtaattttttaatgttactattttgggctaaatgaaatgaagttaagtttagaccaaca |
5281565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 13 - 383
Target Start/End: Original strand, 20358602 - 20358969
Alignment:
| Q |
13 |
aggaagtatataatcttcattttgcaactcagtattactctttaatattcttcttatgtagataacttttgagaattgattgagttttgttgcatgtatt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||| ||||| ||||||||||| |
|
|
| T |
20358602 |
aggaagtatataatcttcattttgcaactcagta---ctctttaatattcttcttatgtaaataacttatgagaattga----gttttcttgcatgtatt |
20358694 |
T |
|
| Q |
113 |
-gcttgctatttataagcacgaaa-attgaagtggtttgcatttgatctttaccttcattaatattttattaaataatgaaccattctttaacaactaca |
210 |
Q |
| |
|
|||||||||||||| | | |||| ||| ||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20358695 |
tgcttgctatttatatgaatgaaatattatagttgtttgcatttgatctttaccgtcattaatattttattaattaatgaaccattctttaacaactaca |
20358794 |
T |
|
| Q |
211 |
tgtatacttgatct--ccaaaccaaagtcaagaccatttttaattgcatggccgtgtctacttgacattgaatttacaacctattctcgtaatggtaatt |
308 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
20358795 |
tgtatacttgatctccccaaaccaaagtcaagaccatatttaattgcattaccgtgttcacttgacattgaatttacaacctattctcgtaatggtaa-t |
20358893 |
T |
|
| Q |
309 |
ttataa-tgaaaatattttggggaaaatgaaattaagataagtttagaccaacactgtgtggcataaatggtatat |
383 |
Q |
| |
|
|||||| | ||||| ||||||| |||||||||||||||||||||||||||||| |||||||| || |||||||| |
|
|
| T |
20358894 |
ttataatttaaaatgttttgggctgaatgaaattaagataagtttagaccaacacagtgtggcacaagtggtatat |
20358969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 20353283 - 20353048
Alignment:
| Q |
13 |
aggaagtatataatcttcattttgcaactcagtattactctttaatattcttcttatgtagat-aacttttgagaattgattgagttttgttgcatgta- |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||| |
|
|
| T |
20353283 |
aggaagtatataatcttcattttgcaactcag---cactctttaatattcttcttatgtaaataaacttgtgaga----attgagttttgttgcatgtat |
20353191 |
T |
|
| Q |
111 |
ttgcttgctatttataagcacgaaa-attgaagt-ggtttgcatttgatctttaccttcattaatattttattaaataatgaaccattctttaacaacta |
208 |
Q |
| |
|
|||||||||||||||||| | |||| ||||| || |||||||||||| |||||| |||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
20353190 |
ttgcttgctatttataagaatgaaacattgatgtatttttgcatttgatatttaccgtcattagttttttattaaataatgaaccattctttaacaacta |
20353091 |
T |
|
| Q |
209 |
catgtatacttgatctccaaaccaaagtcaagaccatttttaa |
251 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
20353090 |
catgtttgcttgatctccaaaccaaagtcaagaccatttttaa |
20353048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 362
Target Start/End: Complemental strand, 20353037 - 20352962
Alignment:
| Q |
287 |
acctattctcgtaatggtaattttataatgaaaatattttggggaaaatgaaattaagataagtttagaccaacac |
362 |
Q |
| |
|
|||| ||||| ||||||||||||| ||||| | ||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
20353037 |
acctgttctcttaatggtaattttttaatgttactattttgggctaaatgaaattaagttaagtttagaccaacac |
20352962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 6236188 - 6236423
Alignment:
| Q |
13 |
aggaagtatataatcttcattttgcaactcagtattactctttaatattcttcttatgtagataacttttgagaattgattgagttttgttgcatgtatt |
112 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||| |
|
|
| T |
6236188 |
aggaagtatagaatcttcattttgcaactcagtactactctttaatattcttcttatgtaaataaccggtgaga----attgagttttgttgcatgtatt |
6236283 |
T |
|
| Q |
113 |
gcttgctatttataagcacgaaa-attgaagtggtttgcatttgatctttaccttcattaatattttattaaataatgaaccattctttaacaactacat |
211 |
Q |
| |
|
|||||||||||||||| | |||| |||||||||||||||||||||| |||||| |||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6236284 |
gcttgctatttataagaatgaaacattgaagtggtttgcatttgatatttaccgtcattagttttttattaaataatgaaccattctttaacaactacat |
6236383 |
T |
|
| Q |
212 |
gtatacttgatctccaaaccaaagtcaagaccatttttaa |
251 |
Q |
| |
|
|| ||||||||||||| || |||||||| ||||||||||| |
|
|
| T |
6236384 |
gtgtacttgatctccatactaaagtcaaaaccatttttaa |
6236423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 6236446 - 6236509
Alignment:
| Q |
299 |
aatggtaattttataatgaaaatattttggggaaaatgaaattaagataagtttagaccaacac |
362 |
Q |
| |
|
|||||||||||| ||||| ||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6236446 |
aatggtaattttgtaatgttaatgttttggactaaatgaaattaagataagtttagaccaacac |
6236509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University