View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19615_high_17 (Length: 500)

Name: NF19615_high_17
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19615_high_17
NF19615_high_17
[»] chr4 (12 HSPs)
chr4 (272-484)||(52462211-52462423)
chr4 (272-484)||(6842261-6842474)
chr4 (1-210)||(46854585-46854793)
chr4 (272-459)||(46854339-46854525)
chr4 (1-210)||(52461945-52462151)
chr4 (1-210)||(6842534-6842742)
chr4 (1-155)||(29322556-29322709)
chr4 (1-126)||(16492032-16492157)
chr4 (278-484)||(29322231-29322437)
chr4 (1-140)||(30417566-30417704)
chr4 (396-468)||(30417240-30417312)
chr4 (169-207)||(29322509-29322547)
[»] chr2 (3 HSPs)
chr2 (1-210)||(6149786-6149993)
chr2 (272-373)||(6149626-6149727)
chr2 (392-484)||(6149541-6149633)
[»] scaffold0373 (2 HSPs)
scaffold0373 (272-484)||(3724-3939)
scaffold0373 (1-210)||(3456-3664)
[»] chr3 (8 HSPs)
chr3 (1-210)||(46224315-46224520)
chr3 (1-156)||(40246287-40246442)
chr3 (272-484)||(46224581-46224792)
chr3 (1-140)||(32263283-32263421)
chr3 (1-98)||(45973019-45973116)
chr3 (396-475)||(40246616-40246696)
chr3 (170-208)||(40246454-40246492)
chr3 (384-456)||(32263662-32263734)
[»] chr1 (2 HSPs)
chr1 (1-210)||(22668172-22668376)
chr1 (272-472)||(22667913-22668112)
[»] chr6 (2 HSPs)
chr6 (1-210)||(34377153-34377358)
chr6 (272-472)||(34376895-34377094)
[»] chr8 (2 HSPs)
chr8 (1-210)||(34615786-34615990)
chr8 (272-484)||(34615516-34615727)
[»] scaffold0114 (1 HSPs)
scaffold0114 (8-210)||(38316-38511)
[»] chr5 (2 HSPs)
chr5 (1-141)||(35112408-35112551)
chr5 (370-465)||(35112085-35112180)
[»] chr7 (1 HSPs)
chr7 (1-51)||(38958452-38958502)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 3e-95; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 272 - 484
Target Start/End: Original strand, 52462211 - 52462423
Alignment:
Q  272 tgaaatatgtgttgtaaaaatatacaagaccagagggtattttggtaaatgcaacaggaataatgactttctttccactttctgatctgtttagtgcaga 371  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  52462211 tgaaatatgtgttgtaaaaatatacaagatcagagggtattttggtaaatgcaacagaaataatgactttctttccactttctgatctgtttagtgcaga 52462310  T
Q  372 aacaattctgacgtgggacctgcaaaaaactttctttccttagctttatgaaggtgtgtcaaatagtggaaagagcatcattccactctctttccattcc 471  Q
    ||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||  |||| ||| ||||||||||||||||||||||||||||||||    
T  52462311 aacaattctgatgtgggacccgcaaaaaactttctttacttagctttatgaaggtgtaccaaacagtagaaagagcatcattccactctctttccattcc 52462410  T
Q  472 actcctctttctt 484  Q
    |||||||||||||    
T  52462411 actcctctttctt 52462423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 272 - 484
Target Start/End: Complemental strand, 6842474 - 6842261
Alignment:
Q  272 tgaaatatgtgttgtaaaaatatacaagaccagagggtattttggtaaatgcaacaggaataatgactttctttccactttctgatctgtttagtgcaga 371  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||  |||||||    
T  6842474 tgaaatatgtgttgtaaaaatatacaagaacagagggtattttggtaaatgcaacaggaatagtgactttctttccactttctaatctgttcggtgcaga 6842375  T
Q  372 aacaattctgacgtgggacctgc-aaaaaactttctttccttagctttatgaaggtgtgtcaaatagtggaaagagcatcattccactctctttccattc 470  Q
    |||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6842374 aacaattctgacgtgggatccgcaaaaaaactttctttccttagctttatgaaggtgtgtcaaacagtggaaagagcatcattccactctctttccattc 6842275  T
Q  471 cactcctctttctt 484  Q
    ||||||||||||||    
T  6842274 cactcctctttctt 6842261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 46854793 - 46854585
Alignment:
Q  1 tttgttggttgtttggttatagtgaaagtaagggaggaaagaaagaaatgaatttattaaatgacataaatagccttatgttattgtgttatttaaatga 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  46854793 tttgttggttgtttggttatagcgaaagtaagggaggaaagaaagaaatgaatttattaaatgacataaatagtcttatgttattgtgttatttaaatga 46854694  T
Q  101 ttttcaataaaaatacatttaaataattttgatataaacactattgaaattggtcacnnnnnnnnnnntgactatcatgagttctaatttgagcatgcta 200  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||           ||||||||||||||||||||||||||||||||    
T  46854693 ttttcaataaaaatacatttaaataatttttatataaacactattaaaattggtcac-aaaaaaaaaatgactatcatgagttctaatttgagcatgcta 46854595  T
Q  201 agaaatgtgt 210  Q
    ||||||||||    
T  46854594 agaaatgtgt 46854585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 272 - 459
Target Start/End: Complemental strand, 46854525 - 46854339
Alignment:
Q  272 tgaaatatgtgttgtaaaaatatacaagaccagagggtattttggtaaatgcaacaggaataatgactttctttccactttctgatctgtttagtgcaga 371  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  46854525 tgaaatatgtgttgtaaaaatatacaagatcagagggtattttggtaaatgcaacaggaatagtgactttctttccactttctgatctgtttaatgcaga 46854426  T
Q  372 aacaattctgacgtgggacctgcaaaaaactttctttccttagctttatgaaggtgtgtcaaatagtggaaagagcatcattccactc 459  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||| ||| ||||||||||||||||||||    
T  46854425 aacaattctgacgtgggacccgcaaaaaactttctttccttagc-ttatgaaggtgtgccaaacagtagaaagagcatcattccactc 46854339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 52461945 - 52462151
Alignment:
Q  1 tttgttggttgtttggttatagtgaaagtaagggaggaaagaaagaaatgaatttattaaatgacataaatagccttatgttattgtgttatttaaatga 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52461945 tttgttgcttgtttggttatagtgaaagtaagggaggaaagaaagaaatgaatttattaaatgacataaatagccttatgttattgtgttatttaaatga 52462044  T
Q  101 ttttcaataaaaatacatttaaataattttgatataaacactattgaaattggtcacnnnnnnnnnnntgactatcatgagttctaatttgagcatgcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||           ||||||| ||||||||||||||||||||||||    
T  52462045 ttttcaataaaaatacatttaaataattttgatataaacactattaaaattgatcac--aaaaaaaaatgactat-atgagttctaatttgagcatgcta 52462141  T
Q  201 agaaatgtgt 210  Q
    ||||||||||    
T  52462142 agaaatgtgt 52462151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 6842742 - 6842534
Alignment:
Q  1 tttgttggttgtttggttatagtgaaagtaagggaggaaagaaagaaatgaatttattaaatgacataaatagccttatgttattgtgttatttaaatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||    
T  6842742 tttgttggttgtttggttatagtgaaagtaagggaggaaagaaagaaatgaatttagtaaatgacaaaaatagc-ttatgttattgtgttatttaaatga 6842644  T
Q  101 ttttcaataaaaatacatttaaataattttgatataaacactattgaaattggtcacnnnnnnnnnnntgactatcatgagttctaatttgagcatgcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||             || || |||||||||||||||||||||||||    
T  6842643 ttttcaataaaaatacatttaaataattttgatataaacactattgaaattggtcatagaaaaaaaaaagattaccatgagttctaatttgagcatgcta 6842544  T
Q  201 agaaatgtgt 210  Q
    ||||||||||    
T  6842543 agaaatgtgt 6842534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 29322709 - 29322556
Alignment:
Q  1 tttgttggttgtttggttatagtgaaagtaagggaggaaagaaagaaatgaatttattaaatgacataaatagccttatgttattgtgttatttaaatga 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||| |    
T  29322709 tttgttggttgtttggttgtagtgaaagtaagggaggaaagaaagaaatgaatttattaaatgatataaataaccctatgttattgtgttatttaaataa 29322610  T
Q  101 ttttcaataaaaatacatttaaataattttgatataaacactattgaaattggtc 155  Q
    ||||||||||| |||||||||||| | ||| |||||||||||||| |||||||||    
T  29322609 ttttcaataaatatacatttaaat-agtttcatataaacactattaaaattggtc 29322556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 16492157 - 16492032
Alignment:
Q  1 tttgttggttgtttggttatagtgaaagtaagggaggaaagaaagaaatgaatttattaaatgacataaatagccttatgttattgtgttatttaaatga 100  Q
    ||||||||||||||||| | |||||||||||  ||||||||||||| ||||||||| ||||||||||||||| |||||| |||||||||||||||||| |    
T  16492157 tttgttggttgtttggtaagagtgaaagtaaaagaggaaagaaagagatgaatttagtaaatgacataaataaccttatattattgtgttatttaaataa 16492058  T
Q  101 ttttcaataaaaatacatttaaataa 126  Q
    |||||||| |||||||||||||||||    
T  16492057 ttttcaatgaaaatacatttaaataa 16492032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 278 - 484
Target Start/End: Complemental strand, 29322437 - 29322231
Alignment:
Q  278 atgtgttgtaaaaatatacaagaccagagggtattttggtaaatgcaacaggaataatgactttctttccactttctgatctgtttagtgcagaaacaat 377  Q
    |||||||||||||||| || | ||  ||||||||||| ||||||||| || ||||| |||| | |||||||||||||| ||| |||||||||||||||||    
T  29322437 atgtgttgtaaaaatacactaaacaggagggtattttagtaaatgcagcaagaatagtgacat-ctttccactttctgctctctttagtgcagaaacaat 29322339  T
Q  378 tctgacgtgggacctgcaaaaaactttctttccttagc-tttatgaaggtgtgtcaaatagtggaaagagcatcattccactctctttccattccactcc 476  Q
    ||  |||||||  |  | |||||||||||||||||||| ||| |||||||||||||||   |||||||  ||||||||||||||||||||  |||||||     
T  29322338 tccaacgtggggtccaccaaaaactttctttccttagcttttgtgaaggtgtgtcaaactatggaaaggacatcattccactctctttcccatccactca 29322239  T
Q  477 tctttctt 484  Q
     |||||||    
T  29322238 cctttctt 29322231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 30417704 - 30417566
Alignment:
Q  1 tttgttggttgtttggttatagtgaaagtaagggaggaaagaaagaaatgaatttattaaatgacataaatagccttatgttattgtgttatttaaatga 100  Q
    ||||||||||||||||| | |||||||||||| ||||||||||||| ||||||||| |||| |||||||||| || || |||||| |||||||||||  |    
T  30417704 tttgttggttgtttggtaagagtgaaagtaagagaggaaagaaagagatgaatttagtaaaagacataaataaccctacgttattttgttatttaaa-aa 30417606  T
Q  101 ttttcaataaaaatacatttaaataattttgatataaaca 140  Q
       ||||| |||||||||||||||||||||| ||||||||    
T  30417605 aaatcaatgaaaatacatttaaataattttggtataaaca 30417566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 468
Target Start/End: Complemental strand, 30417312 - 30417240
Alignment:
Q  396 aaaaactttctttccttagctttatgaaggtgtgtcaaatagtggaaagagcatcattccactctctttccat 468  Q
    ||||| ||||||||| | ||||||  |||||||||||||  || ||||| |||||||||||| ||||||||||    
T  30417312 aaaaagtttctttccattgctttacaaaggtgtgtcaaacggtagaaagtgcatcattccacactctttccat 30417240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 207
Target Start/End: Complemental strand, 29322547 - 29322509
Alignment:
Q  169 tgactatcatgagttctaatttgagcatgctaagaaatg 207  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  29322547 tgactatcatgagttctattttaagcatgctaagaaatg 29322509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 168; Significance: 8e-90; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 6149993 - 6149786
Alignment:
Q  1 tttgttggttgtttggttatagtgaaagtaagggaggaaagaaagaaatgaatttattaaatgacataaatagccttatgttattgtgttatttaaatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6149993 tttgttggttgtttggttatagtgaaagtaagggaggaaagaaagaaatgaatttattaaatgacataaatagccttatgttattgtgttatttaaatga 6149894  T
Q  101 ttttcaataaaaatacatttaaataattttgatataaacactattgaaattggtcacnnnnnnnnnnntgactatcatgagttctaatttgagcatgcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||           ||||||||||||||||||||||||||||||||    
T  6149893 ttttcaataaaaatacatttaaataattttgatataaacactattaaaattggtcac--aaaaaaaaatgactatcatgagttctaatttgagcatgcta 6149796  T
Q  201 agaaatgtgt 210  Q
    ||||||||||    
T  6149795 agaaatgtgt 6149786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 272 - 373
Target Start/End: Complemental strand, 6149727 - 6149626
Alignment:
Q  272 tgaaatatgtgttgtaaaaatatacaagaccagagggtattttggtaaatgcaacaggaataatgactttctttccactttctgatctgtttagtgcaga 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||| ||||||||||||||||    
T  6149727 tgaaatatgtgttgtaaaaatatacaagaccagagggtattttggtaaatgcaacagaaatagtgactttctttctactttctaatctgtttagtgcaga 6149628  T
Q  372 aa 373  Q
    ||    
T  6149627 aa 6149626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 392 - 484
Target Start/End: Complemental strand, 6149633 - 6149541
Alignment:
Q  392 tgcaaaaaactttctttccttagctttatgaaggtgtgtcaaatagtggaaagagcatcattccactctctttccattccactcctctttctt 484  Q
    |||| ||||||||||||||||| ||||||||||||||| |||| ||||||||||  |||||||||||||||||||||||||||||||||||||    
T  6149633 tgcagaaaactttctttccttaactttatgaaggtgtgccaaacagtggaaagaatatcattccactctctttccattccactcctctttctt 6149541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 160; Significance: 5e-85; HSPs: 2)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 272 - 484
Target Start/End: Original strand, 3724 - 3939
Alignment:
Q  272 tgaaatatgtgttgtaaaaatatacaagacc-agagggtattttggtaaatgcaacaggaataatgactttctttccactttctga-tctgtttagtgca 369  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||  |||||    
T  3724 tgaaatatgtgttgtaaaaatatacaagacccagagggtattttggtaaatgcaacaggaatagtgactttctttccactttctaactctgttcggtgca 3823  T
Q  370 gaaacaattctgacgtgggacctgcaaaa-aactttctttccttagctttatgaaggtgtgtcaaatagtggaaagagcatcattccactctctttccat 468  Q
    |||||||||||||||||||| | |||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3824 gaaacaattctgacgtgggatccgcaaaaaaactttctttccttaactttatgaaggtgtgtcaaacagtggaaagagcatcattccactctctttccat 3923  T
Q  469 tccactcctctttctt 484  Q
    ||||||||||||||||    
T  3924 tccactcctctttctt 3939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 3456 - 3664
Alignment:
Q  1 tttgttggttgtttggttatagtgaaagtaagggaggaaagaaagaaatgaatttattaaatgacataaatagccttatgttattgtgttatttaaatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||    
T  3456 tttgttggttgtttggttatagtgaaagtaagggaggaaagaaagaaatgaatttagtaaatgacaaaaatagc-ttatgttattgtgttatttaaatga 3554  T
Q  101 ttttcaataaaaatacatttaaataattttgatataaacactattgaaattggtcacnnnnnnnnnnntgactatcatgagttctaatttgagcatgcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||             || || ||||||| |||||||||||||||||    
T  3555 ttttcaataaaaatacatttaaataattttgatataaacactattgaaattggtcatagaaaaaaaaaagattaccatgagtcctaatttgagcatgcta 3654  T
Q  201 agaaatgtgt 210  Q
    ||||||||||    
T  3655 agaaatgtgt 3664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 4e-76; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 46224315 - 46224520
Alignment:
Q  1 tttgttggttgtttggttatagtgaaagtaagggaggaaagaaagaaatgaatttattaaatgacataaatagccttatgttattgtgttatttaaatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |    
T  46224315 tttgttggttgtttggttatagtgaaagtaagggaggaaagaaagaaatgaatttattaaatgacataaataaccctatgttattgtgttatttaaataa 46224414  T
Q  101 ttttcaataaaaatacatttaaataattttgatataaacactattgaaattggtcacnnnnnnnnnnntgactatcatgagttctaatttgagcatgcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |            ||||||||||||||| ||||||||||||||||    
T  46224415 ttttcaataaaaatacatttaaataattttgatataaacactattaaaattggtaa----aaaaaaaatgactatcatgagttttaatttgagcatgcta 46224510  T
Q  201 agaaatgtgt 210  Q
    ||||||||||    
T  46224511 agaaatgtgt 46224520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 40246287 - 40246442
Alignment:
Q  1 tttgttggttgtttggttatagtgaaagtaagggaggaaagaaagaaatgaatttattaaatgacataaatagccttatgttattgtgttatttaaatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| || |||||||||||||||||||||| |    
T  40246287 tttgttggttgtttggttatagtgaaagtaagggaggaaagaaagaaatgaatctattaaatgatataaataaccctatgttattgtgttatttaaataa 40246386  T
Q  101 ttttcaataaaaatacatttaaataattttgatataaacactattgaaattggtca 156  Q
    ||||||||||| |||||||||||||||||| |||||| ||||||| ||||||||||    
T  40246387 ttttcaataaatatacatttaaataattttcatataagcactattaaaattggtca 40246442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 272 - 484
Target Start/End: Original strand, 46224581 - 46224792
Alignment:
Q  272 tgaaatatgtgttgtaaaaatatacaagaccagagggtattttggtaaatgcaacaggaataatgactttctttccactttctgatctgtttagtgcaga 371  Q
    |||||||||||| ||||||||| ||||||   ||||||||||| |||||||||| | ||||| || | | ||  ||||||||| |||| || ||  || |    
T  46224581 tgaaatatgtgtcgtaaaaatacacaagatttgagggtatttttgtaaatgcaatatgaatagtggcatcctc-ccactttctcatctcttcagcacata 46224679  T
Q  372 aacaattctgacgtgggacctgcaaaaaactttctttccttagctttatgaaggtgtgtcaaatagtggaaagagcatcattccactctctttccattcc 471  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||  ||||  |||||||| ||||||||||||||||||| ||||||    
T  46224680 aacaattctgacgtgggacctgcaaaaaactttttttccttagctttgtgaaggtgttccaaacggtggaaagggcatcattccactctcttttcattcc 46224779  T
Q  472 actcctctttctt 484  Q
    || | ||||||||    
T  46224780 acccatctttctt 46224792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 32263283 - 32263421
Alignment:
Q  1 tttgttggttgtttggttatagtgaaagtaagggaggaaagaaagaaatgaatttattaaatgacataaatagccttatgttattgtgttatttaaatga 100  Q
    ||||||||||||||||| | |||||||||||| ||||||||||||| ||||||||| |||| |||||||||| || || |||||| |||||||||||  |    
T  32263283 tttgttggttgtttggtaagagtgaaagtaagagaggaaagaaagagatgaatttagtaaaagacataaataaccctacgttattttgttatttaaa-aa 32263381  T
Q  101 ttttcaataaaaatacatttaaataattttgatataaaca 140  Q
       ||||| |||||||||||||||||||||| ||||||||    
T  32263382 aaatcaatgaaaatacatttaaataattttggtataaaca 32263421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 45973116 - 45973019
Alignment:
Q  1 tttgttggttgtttggttatagtgaaagtaagggaggaaagaaagaaatgaatttattaaatgacataaatagccttatgttattgtgttatttaaat 98  Q
    ||||||||||||||||| | | ||||||| |  ||||||||||||| || | |||| ||||||||||||||| || ||| |||| |||||||||||||    
T  45973116 tttgttggttgtttggtaagaatgaaagtgaaagaggaaagaaagatattagtttagtaaatgacataaataaccctatattatagtgttatttaaat 45973019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 475
Target Start/End: Original strand, 40246616 - 40246696
Alignment:
Q  396 aaaaactttctttccttagcttt-atgaaggtgtgtcaaatagtggaaagagcatcattccactctctttccattccactc 475  Q
    ||||||||| ||||| ||||||| ||||||||||| ||||   |||||||| ||||||| ||||||||||||  |||||||    
T  40246616 aaaaactttatttccctagcttttatgaaggtgtgccaaactatggaaagaacatcatttcactctctttcccatccactc 40246696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 208
Target Start/End: Original strand, 40246454 - 40246492
Alignment:
Q  170 gactatcatgagttctaatttgagcatgctaagaaatgt 208  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  40246454 gactatcatgagttctattttaagcatgctaagaaatgt 40246492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 456
Target Start/End: Original strand, 32263662 - 32263734
Alignment:
Q  384 gtgggacctgcaaaaaactttctttccttagctttatgaaggtgtgtcaaatagtggaaagagcatcattcca 456  Q
    ||||||||  ||||||| ||||||||| | ||||||  |||||||| ||||| || ||||| |||||||||||    
T  32263662 gtgggacccacaaaaaagtttctttccattgctttacaaaggtgtgccaaattgtagaaagtgcatcattcca 32263734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 22668376 - 22668172
Alignment:
Q  1 tttgttggttgtttggttatagtgaaagtaagggaggaaagaaagaaatgaatttattaaatgacataaatagccttatgttattgtgttatttaaatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |    
T  22668376 tttgttggttgtttggttatagtgaaagtaagggaggaaagaaagaaatgaatttattaaatgacataaataaccctatgttattgtgttatttaaataa 22668277  T
Q  101 ttttcaataaaaatacatttaaataattttgatataaacactattgaaattggtcacnnnnnnnnnnntgactatcatgagttctaatttgagcatgcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| | |            |||||||||||| || ||||||||||||||||    
T  22668276 ttttcaataaaaatacatttaaataattttgatataaacactattaaaattgataa-----aaaaaaatgactatcatgaattttaatttgagcatgcta 22668182  T
Q  201 agaaatgtgt 210  Q
    ||||||||||    
T  22668181 agaaatgtgt 22668172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 272 - 472
Target Start/End: Complemental strand, 22668112 - 22667913
Alignment:
Q  272 tgaaatatgtgttgtaaaaatatacaagaccagagggtattttggtaaatgcaacaggaataatgactttctttccactttctgatctgtttagtgcaga 371  Q
    |||||||||||||||||||||| |||||||  ||||||||||| |||||||||| |  |||| || | | ||| ||||||||| |||| || ||  ||||    
T  22668112 tgaaatatgtgttgtaaaaatacacaagactggagggtatttttgtaaatgcaatataaatagtggcat-cttcccactttctcatctcttcagcacaga 22668014  T
Q  372 aacaattctgacgtgggacctgcaaaaaactttctttccttagctttatgaaggtgtgtcaaatagtggaaagagcatcattccactctctttccattcc 471  Q
    ||||||||||||||||||||  ||| ||||||| ||||| ||||||| |||||||||  ||||  |||||||| ||||||||||||||||||||||||||    
T  22668013 aacaattctgacgtgggacccacaagaaactttttttccatagctttgtgaaggtgttccaaacggtggaaagggcatcattccactctctttccattcc 22667914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 133; Significance: 6e-69; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 34377358 - 34377153
Alignment:
Q  1 tttgttggttgtttggttatagtgaaagtaagggaggaaagaaagaaatgaatttattaaatgacataaatagccttatgttattgtgttatttaaatga 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| || |||||||||||||||||||||| |    
T  34377358 tttgttggttgtttggttatagtgaaagtaagggaggaaataaataaatgaatttattaaatgacataaataaccctatgttattgtgttatttaaataa 34377259  T
Q  101 ttttcaataaaaatacatttaaataattttgatataaacactattgaaattggtcacnnnnnnnnnnntgactatcatgagttctaatttgagcatgcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||            ||||||||| ||||| ||||||||||||||||    
T  34377258 ttttcaataaaaatacatttaaataattttgatataaacactattaaaattgatca----aaaaaaaatgactatcaagagttttaatttgagcatgcta 34377163  T
Q  201 agaaatgtgt 210  Q
    ||||||||||    
T  34377162 agaaatgtgt 34377153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 272 - 472
Target Start/End: Complemental strand, 34377094 - 34376895
Alignment:
Q  272 tgaaatatgtgttgtaaaaatatacaagaccagagggtattttggtaaatgcaacaggaataatgactttctttccactttctgatctgtttagtgcaga 371  Q
    |||||||||||||||||||||| |||||||  ||||||||||| |||||||||| |  |||| || | | || || ||||||| |||| |||||  || |    
T  34377094 tgaaatatgtgttgtaaaaatacacaagactggagggtatttttgtaaatgcaatataaatagtggcatcctctc-actttctcatctctttagcacata 34376996  T
Q  372 aacaattctgacgtgggacctgcaaaa--aactttctttccttagctttatgaaggtgtgtcaaatagtggaaagagcatcattccactctctttccatt 469  Q
    ||||||||| ||||||||||  || ||  |||||  ||||||||||||| |  ||||||  ||||  |||||||| ||||||||||||||||||||||||    
T  34376995 aacaattctaacgtgggacccacacaagaaacttgttttccttagctttgt--aggtgttccaaacggtggaaagggcatcattccactctctttccatt 34376898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 9e-62; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 34615990 - 34615786
Alignment:
Q  1 tttgttggttgtttggttatagtgaaagtaagggaggaaagaaagaaatgaatttattaaatgacataaatagccttatgttattgtgttatttaaatga 100  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||| || ||||||| |||||||||||||| |    
T  34615990 tttgttggttgtttggttatagtgaaagtaagggaggaaaaaatgaaatgaatttattagatgacataaataaccctatgttactgtgttatttaaataa 34615891  T
Q  101 ttttcaataaaaatacatttaaataattttgatataaacactattgaaattggtcacnnnnnnnnnnntgactatcatgagttctaatttgagcatgcta 200  Q
    ||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||            |||||||| |||||| ||||||||||||||||    
T  34615890 ttttcaataaaaatatatttaaataattttgatataaaaactattaaaattggtca-----aaaaaaatgactatcgtgagttttaatttgagcatgcta 34615796  T
Q  201 agaaatgtgt 210  Q
    ||||||||||    
T  34615795 agaaatgtgt 34615786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 272 - 484
Target Start/End: Complemental strand, 34615727 - 34615516
Alignment:
Q  272 tgaaatatgtgttgtaaaaatatacaagaccagagggtattttggtaaatgcaacaggaataatgactttctttccactttctgatctgtttagtgcaga 371  Q
    |||||||||||||||||||||| |||||||   ||||||| || ||||||||| || |||||||||| | ||  ||||||||| |||| || || ||| |    
T  34615727 tgaaatatgtgttgtaaaaatacacaagactgaagggtatatttgtaaatgcagcatgaataatgacatcctc-ccactttctcatctcttcagcgcata 34615629  T
Q  372 aacaattctgacgtgggacctgcaaaaaactttctttccttagctttatgaaggtgtgtcaaatagtggaaagagcatcattccactctctttccattcc 471  Q
    ||||||||||||||||||||  ||| ||| ||||||||||| ||| | |||||||||  ||||  |||||||| ||||||||||||||||||||||||||    
T  34615628 aacaattctgacgtgggacccacaagaaagtttctttccttcgctctgtgaaggtgttccaaacggtggaaagggcatcattccactctctttccattcc 34615529  T
Q  472 actcctctttctt 484  Q
    || | ||||||||    
T  34615528 acccatctttctt 34615516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 8 - 210
Target Start/End: Original strand, 38316 - 38511
Alignment:
Q  8 gttgtttggttatagtgaaagtaagggaggaaagaaagaaatgaatttattaaatgacataaatagccttatgttattgtgttatttaaatgattttcaa 107  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| | ||||| ||    
T  38316 gttgtttggttatagtgaaattaagggaggaaagaaagaaatgaatttattaaatgacataaataaccctatgttattgtgttatttaagtaattttgaa 38415  T
Q  108 taaaaatacatttaaataattttgatataaacactattgaaattggtcacnnnnnnnnnnntgactatcatgagttctaatttgagcatgctaagaaatg 207  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||| |            | |||||||||||||||||||||||||||||||||| ||    
T  38416 taaaaatacatgtaaataattttgatataaacactattaaaattggtaa-------aaaaattactatcatgagttctaatttgagcatgctaagaagtg 38508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 35112551 - 35112408
Alignment:
Q  1 tttgttggttgtttggttatagtgaaagtaagggaggaaagaaagaaatgaatttattaaatgacataaatagccttatgttattgtgttatttaaatga 100  Q
    ||||||||||||||||| | |||||||||||  ||||||||||||| ||||||||| |||| |||||||||| |||||||||| ||||||| |||||| |    
T  35112551 tttgttggttgtttggtaagagtgaaagtaaaagaggaaagaaagagatgaatttagtaaaagacataaataaccttatgttaatgtgttaattaaataa 35112452  T
Q  101 ttttcaata---aaaatacatttaaataattttgatataaacac 141  Q
    |||||| ||   |||||||||||||||| ||||| ||| |||||    
T  35112451 ttttcattattgaaaatacatttaaatagttttggtatgaacac 35112408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 370 - 465
Target Start/End: Complemental strand, 35112180 - 35112085
Alignment:
Q  370 gaaacaattctgacgtgggacctgcaaaaaactttctttccttagctttatgaaggtgtgtcaaatagtggaaagagcatcattccactctctttc 465  Q
    |||||| |||| | ||||||||  ||||||| ||||||||||||||||||| ||| |||| ||||   | ||||| ||||||||||||||||||||    
T  35112180 gaaacatttcttatgtgggaccctcaaaaaagtttctttccttagctttattaagctgtgccaaactatagaaagtgcatcattccactctctttc 35112085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 38958452 - 38958502
Alignment:
Q  1 tttgttggttgtttggttatagtgaaagtaagggaggaaagaaagaaatga 51  Q
    ||||||||||||||||| | |||||||||||| ||||||||||||| ||||    
T  38958452 tttgttggttgtttggtaagagtgaaagtaagagaggaaagaaagagatga 38958502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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