View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_high_20 (Length: 476)
Name: NF19615_high_20
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 30 - 327
Target Start/End: Original strand, 49976997 - 49977304
Alignment:
| Q |
30 |
tgaaaggggtagttggtaaagtgataagaaataaataaatg----------caatgcaatgatgattttgggttattgggaatgaagttggtttacttta |
119 |
Q |
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| T |
49976997 |
tgaaaggggtagttggtaaagtgataagaaataaataaatgcaatgcaatgcaatgcaatgatgattttgggttattgggaatgaagttggtttacttta |
49977096 |
T |
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| Q |
120 |
tttaattaaggtaaaggaagggtctcatcaaagttgcttaaattggatatttggttacaacagttacaggttataaggaaaaggaaaacggcgaagatga |
219 |
Q |
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| T |
49977097 |
tttaattaaggtaaaggaagggtctcatcaaagttgcttaaattggatatttggttacaacagttacaggttataaggaaaaggaaaacggcgaagatga |
49977196 |
T |
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| Q |
220 |
tgatgatagaaaagacgagaaggtctatgaatgtagattttgttccctcaaattctgcaagtctcaggctcttgggggacacatgaaccgtcatcgccaa |
319 |
Q |
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| T |
49977197 |
tgatgatagaaaagacgagaaggtctatgaatgtagattttgttccctcaaattctgcaagtctcaggctcttgggggacacatgaaccgtcatcgccaa |
49977296 |
T |
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| Q |
320 |
ggctagct |
327 |
Q |
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| T |
49977297 |
ggctagct |
49977304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 378 - 464
Target Start/End: Original strand, 49977355 - 49977441
Alignment:
| Q |
378 |
caaaagaaaatattccatttcaataaaacctttgatataataataattttattatttttcggtttgatttgatttgtgattgttgtg |
464 |
Q |
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| T |
49977355 |
caaaagaaaatattccatttcaataaaacctttgatataataatatttttattatttttcggtttgatttgatttgttattgttgtg |
49977441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 238 - 327
Target Start/End: Complemental strand, 49953557 - 49953468
Alignment:
| Q |
238 |
gaaggtctatgaatgtagattttgttccctcaaattctgcaagtctcaggctcttgggggacacatgaaccgtcatcgccaaggctagct |
327 |
Q |
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| T |
49953557 |
gaaggtctatgaatgtagattctgttccctcaagttctgtaaatctcaggctcttgggggacacatgaaccgtcaccgccaaggctagct |
49953468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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