View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19615_high_28 (Length: 438)
Name: NF19615_high_28
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_high_28 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 9 - 420
Target Start/End: Original strand, 1360929 - 1361340
Alignment:
| Q |
9 |
ttaagacttcgagtgctactatatcttcaactcctgcatactcttcctaatcatatcttcaacttttacatattctttctactcatacataccaaacaaa |
108 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1360929 |
ttaagacttcgactgctactatatcttcaactcttgcatactcttcctaatcatatcttcaacttttacatattctttctactcatacataccaaacaaa |
1361028 |
T |
|
| Q |
109 |
tccaagtctccatgggttcaattgctaatgaagatagcaacagacctcttcatattgtaatgctcccatggctggctatgggacacatatacccttactt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1361029 |
tccaagtctccatgggttcaattgctaatgaagatagcaacaaacctcttcatattgtaatgctcccatggctggctatgggacacatatacccttactt |
1361128 |
T |
|
| Q |
209 |
cgaagtagccaaaattctagcttcaaagggtcacactgtcaccttcatcaactcccctaaaaacattgaccaaatgccaaaaacacccaaaaccattgaa |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1361129 |
tgaagtagccaaaattctagcttcaaagggtcacactgtcaccttcatcaactcccctaaaaacattgaccaaatgccaaaaacacccaaaaccattgaa |
1361228 |
T |
|
| Q |
309 |
ccattcattaaattggtaagattgcctttaccacacatagagcaactcccaccaggtgcagaaaacactatggacattcaaccaaacatgaaccgtttcc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1361229 |
ccattcattaaattggtaagattgcctttaccacacatagagcaactcccaccaggcgcagaaaacactatggacattcaaccaaacatgaaccgtttcc |
1361328 |
T |
|
| Q |
409 |
ttaagcaagcct |
420 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1361329 |
ttaagcaagcct |
1361340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 104 - 401
Target Start/End: Original strand, 1354135 - 1354435
Alignment:
| Q |
104 |
acaaatccaagtctccatgggttcaattgctaatgaaga---tagcaacagacctcttcatattgtaatgctcccatggctggctatgggacacatatac |
200 |
Q |
| |
|
|||||||||||||| |||||||| | || ||||||||| ||| |||| |||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
1354135 |
acaaatccaagtcttgatgggttctactgttaatgaagaagatagtaacaaacctcttcatattgtaatgctcccatggctagctatgggacatatatac |
1354234 |
T |
|
| Q |
201 |
ccttacttcgaagtagccaaaattctagcttcaaagggtcacactgtcaccttcatcaactcccctaaaaacattgaccaaatgccaaaaacacccaaaa |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1354235 |
ccttactttgaagtagccaaaattctagcttcaaagggtcacactgtcaccttcatcaactcccctaaaaacattgaccaaatgccaaaaacacccaaaa |
1354334 |
T |
|
| Q |
301 |
ccattgaaccattcattaaattggtaagattgcctttaccacacatagagcaactcccaccaggtgcagaaaacactatggacattcaaccaaacatgaa |
400 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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|
| T |
1354335 |
ccattgaaccattcatcaaattggtaagattgcctttaccacacatagagcaactcccaccaggtgcagaaaacactatggacattccaataaacatgaa |
1354434 |
T |
|
| Q |
401 |
c |
401 |
Q |
| |
|
| |
|
|
| T |
1354435 |
c |
1354435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 153 - 355
Target Start/End: Original strand, 20491873 - 20492075
Alignment:
| Q |
153 |
cctcttcatattgtaatgctcccatggctggctatgggacacatatacccttacttcgaagtagccaaaattctagcttcaaagggtcacactgtcacct |
252 |
Q |
| |
|
||||||||| |||||||| |||| ||||| |||||||||||||| |||||||| ||||| |||| |||||||| ||| |||||||||||||||||||| |
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|
| T |
20491873 |
cctcttcatgttgtaatgatcccttggctagctatgggacacatgtacccttatttcgagttagcaaaaattcttgctcaaaagggtcacactgtcacct |
20491972 |
T |
|
| Q |
253 |
tcatcaactcccctaaaaacattgaccaaatgccaaaaacacccaaaaccattgaaccattcattaaattggtaagattgcctttaccacacatagagca |
352 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||||| ||| |||||||| | ||| |||||||||| || ||||||| || ||||||||| ||||||| || |
|
|
| T |
20491973 |
tcataaactcccccaaaaacattgatcaaatgcccaaagcacccaaagcaattcaaccattcatcaatttggtaaaatcacctttaccatacatagaaca |
20492072 |
T |
|
| Q |
353 |
act |
355 |
Q |
| |
|
||| |
|
|
| T |
20492073 |
act |
20492075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 153 - 355
Target Start/End: Original strand, 11529703 - 11529905
Alignment:
| Q |
153 |
cctcttcatattgtaatgctcccatggctggctatgggacacatatacccttacttcgaagtagccaaaattctagcttcaaagggtcacactgtcacct |
252 |
Q |
| |
|
||||||||| ||| ||||||||| ||||| ||||||||||||||||||||||| || ||| | ||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
11529703 |
cctcttcatgttgcaatgctcccttggctagctatgggacacatatacccttattttgaattggccaaaattcttgctcaaaagggtcacactgtcacct |
11529802 |
T |
|
| Q |
253 |
tcatcaactcccctaaaaacattgaccaaatgccaaaaacacccaaaaccattgaaccattcattaaattggtaagattgcctttaccacacatagagca |
352 |
Q |
| |
|
| || | ||| |||||||||||||| ||||| || |||||||| ||| | ||| | |||||||| || ||||||| ||| || ||||| |||||||| || |
|
|
| T |
11529803 |
taataacctctcctaaaaacattgatcaaattcccaaaacaccaaaagcaattcagccattcatcaatttggtaaaattacccttaccccacatagaaca |
11529902 |
T |
|
| Q |
353 |
act |
355 |
Q |
| |
|
||| |
|
|
| T |
11529903 |
act |
11529905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 156 - 349
Target Start/End: Original strand, 14588164 - 14588357
Alignment:
| Q |
156 |
cttcatattgtaatgctcccatggctggctatgggacacatatacccttacttcgaagtagccaaaattctagcttcaaagggtcacactgtcaccttca |
255 |
Q |
| |
|
|||||| |||||||| | |||||||| ||||||||||||||| |||| ||||| ||||||||||||| ||| ||| |||||||||||||| |||| |
|
|
| T |
14588164 |
cttcatgttgtaatggtaccatggctagctatgggacacatactaccttttttcgagttagccaaaattcttgctcaaaatggtcacactgtcacattca |
14588263 |
T |
|
| Q |
256 |
tcaactcccctaaaaacattgaccaaatgccaaaaacacccaaaaccattgaaccattcattaaattggtaagattgcctttaccacacataga |
349 |
Q |
| |
|
| |||||||||||||||||||| |||||||| |||||||||||||| || |||||||||| || ||||||| || ||||||||| ||||||| |
|
|
| T |
14588264 |
taaactcccctaaaaacattgatcaaatgcccaaaacacccaaaacacttcaaccattcatcaagttggtaaaatcacctttaccatacataga |
14588357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 156 - 349
Target Start/End: Original strand, 14621822 - 14622015
Alignment:
| Q |
156 |
cttcatattgtaatgctcccatggctggctatgggacacatatacccttacttcgaagtagccaaaattctagcttcaaagggtcacactgtcaccttca |
255 |
Q |
| |
|
|||||| |||||||| | |||||||| ||||||||||||||| |||| ||||| ||||||||||||| ||| ||| |||||||||||||| |||| |
|
|
| T |
14621822 |
cttcatgttgtaatggtaccatggctagctatgggacacatactaccttttttcgagttagccaaaattcttgctcaaaatggtcacactgtcacgttca |
14621921 |
T |
|
| Q |
256 |
tcaactcccctaaaaacattgaccaaatgccaaaaacacccaaaaccattgaaccattcattaaattggtaagattgcctttaccacacataga |
349 |
Q |
| |
|
| |||||||||||||||||||| |||||||| |||||||||||||| || |||||||||| || ||||||| || ||||||||| ||||||| |
|
|
| T |
14621922 |
taaactcccctaaaaacattgatcaaatgcccaaaacacccaaaacacttcaaccattcatcaagttggtaaaatcacctttaccatacataga |
14622015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 153 - 325
Target Start/End: Original strand, 12845695 - 12845867
Alignment:
| Q |
153 |
cctcttcatattgtaatgctcccatggctggctatgggacacatatacccttacttcgaagtagccaaaattctagcttcaaagggtcacactgtcacct |
252 |
Q |
| |
|
||||||||| |||||||| | |||||||| ||||||||||||||||||||||| || || | ||||| ||||| ||| |||||||||| ||| |||| |
|
|
| T |
12845695 |
cctcttcatgttgtaatggttccatggctagctatgggacacatatacccttattttgagttggccaagattcttgctcaaaagggtcactatgttacct |
12845794 |
T |
|
| Q |
253 |
tcatcaactcccctaaaaacattgaccaaatgccaaaaacacccaaaaccattgaaccattcattaaattggt |
325 |
Q |
| |
|
|||| ||| ||||||||| |||||||| ||||||||||| || |||| || |||||||||| |||||||| |
|
|
| T |
12845795 |
tcataaacagccctaaaaatattgaccacatgccaaaaacccctaaaattcttcaaccattcataaaattggt |
12845867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 288 - 401
Target Start/End: Original strand, 47073206 - 47073319
Alignment:
| Q |
288 |
aaaacacccaaaaccattgaaccattcattaaattggtaagattgcctttaccacacatagagcaactcccaccaggtgcagaaaacactatggacattc |
387 |
Q |
| |
|
||||||||||||||||||||| |||| || ||||| ||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
47073206 |
aaaacacccaaaaccattgaagcatttatcaaattagtaaggttgcctttaccacacgtagagcaattcccaccaggtgcagaaaacactatggacattc |
47073305 |
T |
|
| Q |
388 |
aaccaaacatgaac |
401 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
47073306 |
cactaaacatgaac |
47073319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 153 - 355
Target Start/End: Complemental strand, 51370715 - 51370513
Alignment:
| Q |
153 |
cctcttcatattgtaatgctcccatggctggctatgggacacatatacccttacttcgaagtagccaaaattctagcttcaaagggtcacactgtcacct |
252 |
Q |
| |
|
||||||||| ||| ||||||||||||||| |||||||||||| || |||||| || || | ||||||||||| ||| ||| |||||||||||||||| |
|
|
| T |
51370715 |
cctcttcatgttgcaatgctcccatggcttgctatgggacacgtactcccttattttgagttggccaaaattcttgctcaaaatggtcacactgtcacct |
51370616 |
T |
|
| Q |
253 |
tcatcaactcccctaaaaacattgaccaaatgccaaaaacacccaaaaccattgaaccattcattaaattggtaagattgcctttaccacacatagagca |
352 |
Q |
| |
|
| |||||||| || ||||||||||| ||||| || ||| |||||||||| ||| |||||||||| || ||||| | || ||||||||||| ||||| || |
|
|
| T |
51370615 |
ttatcaactctcccaaaaacattgatcaaattcctaaaccacccaaaacaattcaaccattcatcaatttggttaaatcacctttaccacatatagaaca |
51370516 |
T |
|
| Q |
353 |
act |
355 |
Q |
| |
|
||| |
|
|
| T |
51370515 |
act |
51370513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 153 - 355
Target Start/End: Original strand, 29953738 - 29953940
Alignment:
| Q |
153 |
cctcttcatattgtaatgctcccatggctggctatgggacacatatacccttacttcgaagtagccaaaattctagcttcaaagggtcacactgtcacct |
252 |
Q |
| |
|
||||||||| | ||||||||||| || || ||||||||||||||||||||||| ||||| | ||||| ||||| ||| ||| ||||||||||||| | |
|
|
| T |
29953738 |
cctcttcatgtcgtaatgctcccttgactcgctatgggacacatatacccttatttcgagttggccaagattcttgctcaaaatcgtcacactgtcacat |
29953837 |
T |
|
| Q |
253 |
tcatcaactcccctaaaaacattgaccaaatgccaaaaacacccaaaaccattgaaccattcattaaattggtaagattgcctttaccacacatagagca |
352 |
Q |
| |
|
| || | ||| || || |||||| ||||| || ||| |||||||||| ||| |||||||||| || ||||||| || ||||||||| ||||||| || |
|
|
| T |
29953838 |
ttataagctctcccggaatcattgatcaaattccgaaaccacccaaaacaattcaaccattcatcaatttggtaaaatcacctttaccatacatagaaca |
29953937 |
T |
|
| Q |
353 |
act |
355 |
Q |
| |
|
||| |
|
|
| T |
29953938 |
act |
29953940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 288 - 401
Target Start/End: Complemental strand, 26970760 - 26970647
Alignment:
| Q |
288 |
aaaacacccaaaaccattgaaccattcattaaattggtaagattgcctttaccacacatagagcaactcccaccaggtgcagaaaacactatggacattc |
387 |
Q |
| |
|
|||||||| |||||||||||| |||| || ||||| ||||| ||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
26970760 |
aaaacacctaaaaccattgaagcatttatcaaattagtaaggttgcctttaccacacgtagagcaattcccaccaggtgctgaaaacactatggacattc |
26970661 |
T |
|
| Q |
388 |
aaccaaacatgaac |
401 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
26970660 |
cactaaacatgaac |
26970647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 288 - 387
Target Start/End: Original strand, 41190693 - 41190792
Alignment:
| Q |
288 |
aaaacacccaaaaccattgaaccattcattaaattggtaagattgcctttaccacacatagagcaactcccaccaggtgcagaaaacactatggacattc |
387 |
Q |
| |
|
||||||||||||| |||| ||||||| || ||||| ||||| || |||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41190693 |
aaaacacccaaaagcattcaaccatttatcaaattagtaaggttacctttaccacacgtagagcaattcccaccaggtgcagaaaacactatggacattc |
41190792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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