View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_high_29 (Length: 436)
Name: NF19615_high_29
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 16615372 - 16615792
Alignment:
| Q |
1 |
tgttaactacttaatggattgatcatatcactgactttggttagtagtgggggtga--agatgtaaaatgcaagtaataggtaccttttgtgtaacttct |
98 |
Q |
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| T |
16615372 |
tgttaactacttaatggattgatcatatcactgactttggttagtagtgggggtgagaagatgtaaaatgcaagtaataggtaccttttgtgtaacttct |
16615471 |
T |
|
| Q |
99 |
aattttcattatagaatgtgtttgttttcttatgcattttttgtgtactctttacaatcatgagcagcatcttgtaatgccattgatgatttgtttttaa |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
16615472 |
aattttcattatagaatgtgtttgttttcttatgcattttttgtgtactctttacaatcatgagcagcatcttgcaatgaaattgatgatttgtttttaa |
16615571 |
T |
|
| Q |
199 |
taagtaggaatcgaaatcgggatctcggagtttacaacactctcgcactatgtgcactaaccatttgcgctagacctgattgtaatgaatttttatttga |
298 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
16615572 |
taagtaggaatcgaaatcgggatctcagagtttacaacacgctcacactatgtgcactaaccatttgtgctagacctgattgtactgaatttttatttga |
16615671 |
T |
|
| Q |
299 |
atgttaaggtgcaatagttgataaagtataataacac--atagcaacnnnnnnnnnnttgaagttgaagataatgtttgcatgtatgcaaatacttggtc |
396 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16615672 |
atgttaaggtgcaatagttgataacgtataataacacatatagcaacaaaagaaaaattgaagttgaagataatgtttgcatgtatgcaaatacttggtc |
16615771 |
T |
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| Q |
397 |
atgtctactgaaggcttaact |
417 |
Q |
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|| | |||||||||||||||| |
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| T |
16615772 |
atatatactgaaggcttaact |
16615792 |
T |
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