View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19615_high_41 (Length: 388)

Name: NF19615_high_41
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19615_high_41
NF19615_high_41
[»] chr8 (14 HSPs)
chr8 (146-372)||(38815413-38815639)
chr8 (78-150)||(38815728-38815800)
chr8 (16-79)||(38815946-38816009)
chr8 (149-267)||(39456250-39456371)
chr8 (20-142)||(39456470-39456593)
chr8 (268-309)||(25021688-25021729)
chr8 (146-218)||(39464003-39464076)
chr8 (268-371)||(500347-500460)
chr8 (268-308)||(39434860-39434900)
chr8 (268-371)||(35739861-35739973)
chr8 (268-309)||(3188161-3188202)
chr8 (268-309)||(42922001-42922042)
chr8 (307-371)||(8619934-8619998)
chr8 (271-307)||(40839745-40839781)
[»] chr1 (8 HSPs)
chr1 (16-149)||(39407106-39407241)
chr1 (268-371)||(4861863-4861976)
chr1 (268-371)||(29169668-29169780)
chr1 (268-371)||(34644686-34644799)
chr1 (314-371)||(2764599-2764656)
chr1 (314-371)||(37932148-37932205)
chr1 (268-309)||(50161291-50161332)
chr1 (268-304)||(45659521-45659557)
[»] chr5 (13 HSPs)
chr5 (43-140)||(20148233-20148332)
chr5 (268-374)||(33691929-33692045)
chr5 (268-371)||(35310568-35310681)
chr5 (268-371)||(27336813-27336926)
chr5 (268-374)||(32269671-32269787)
chr5 (314-371)||(3114093-3114150)
chr5 (308-371)||(43115382-43115445)
chr5 (268-309)||(13166784-13166825)
chr5 (268-309)||(38446358-38446399)
chr5 (268-309)||(433484-433525)
chr5 (268-309)||(34335529-34335570)
chr5 (268-309)||(35456148-35456189)
chr5 (268-300)||(15291900-15291932)
[»] chr6 (11 HSPs)
chr6 (268-374)||(33220585-33220701)
chr6 (268-371)||(12401451-12401564)
chr6 (268-374)||(34304613-34304729)
chr6 (268-373)||(357591-357706)
chr6 (273-371)||(959700-959808)
chr6 (314-373)||(28008917-28008976)
chr6 (268-309)||(29337957-29337998)
chr6 (268-307)||(32115883-32115922)
chr6 (267-301)||(20693474-20693508)
chr6 (268-371)||(28543495-28543608)
chr6 (314-374)||(45607-45667)
[»] chr4 (16 HSPs)
chr4 (268-374)||(50000799-50000915)
chr4 (267-374)||(31847204-31847321)
chr4 (268-374)||(53619703-53619819)
chr4 (307-374)||(132502-132571)
chr4 (268-363)||(3330078-3330183)
chr4 (268-302)||(53098605-53098639)
chr4 (268-309)||(12053603-12053644)
chr4 (268-309)||(16957728-16957769)
chr4 (268-309)||(18534592-18534633)
chr4 (268-305)||(25504489-25504526)
chr4 (268-309)||(25706701-25706742)
chr4 (268-309)||(56461981-56462022)
chr4 (268-308)||(6865687-6865727)
chr4 (308-371)||(55933386-55933449)
chr4 (270-308)||(12918248-12918286)
chr4 (268-371)||(26521608-26521721)
[»] chr3 (10 HSPs)
chr3 (268-374)||(39583103-39583219)
chr3 (268-308)||(29861990-29862030)
chr3 (271-307)||(53785903-53785939)
chr3 (269-307)||(13582703-13582741)
chr3 (268-370)||(7900979-7901091)
chr3 (307-372)||(38146175-38146240)
chr3 (268-307)||(49018157-49018196)
chr3 (268-309)||(37992524-37992565)
chr3 (323-371)||(46940709-46940757)
chr3 (268-308)||(54508259-54508298)
[»] scaffold0095 (3 HSPs)
scaffold0095 (20-142)||(13147-13270)
scaffold0095 (149-267)||(13369-13490)
scaffold0095 (146-218)||(24425-24498)
[»] chr7 (11 HSPs)
chr7 (268-374)||(4501375-4501491)
chr7 (268-374)||(28517161-28517277)
chr7 (268-374)||(5825388-5825504)
chr7 (268-361)||(43857004-43857107)
chr7 (268-371)||(45613716-45613829)
chr7 (271-308)||(10905298-10905335)
chr7 (268-374)||(3676756-3676873)
chr7 (314-372)||(21326768-21326826)
chr7 (307-372)||(22198105-22198170)
chr7 (307-372)||(22239651-22239716)
chr7 (309-370)||(32584722-32584783)
[»] chr2 (17 HSPs)
chr2 (307-374)||(44686536-44686603)
chr2 (62-118)||(12081236-12081292)
chr2 (268-307)||(17344832-17344871)
chr2 (268-307)||(18744828-18744867)
chr2 (268-309)||(27502553-27502594)
chr2 (268-309)||(28225192-28225233)
chr2 (268-307)||(23484812-23484851)
chr2 (147-270)||(12081012-12081135)
chr2 (16-110)||(12088078-12088174)
chr2 (314-374)||(3825844-3825904)
chr2 (267-307)||(20142613-20142653)
chr2 (268-307)||(4412940-4412979)
chr2 (268-307)||(19161657-19161696)
chr2 (149-238)||(12087859-12087948)
chr2 (268-309)||(10579653-10579694)
chr2 (326-374)||(5532536-5532584)
chr2 (314-374)||(41867838-41867898)
[»] scaffold1768 (1 HSPs)
scaffold1768 (268-370)||(58-170)
[»] scaffold0186 (1 HSPs)
scaffold0186 (268-306)||(19916-19954)
[»] scaffold0490 (1 HSPs)
scaffold0490 (307-371)||(6454-6517)
[»] scaffold0148 (1 HSPs)
scaffold0148 (268-358)||(33382-33484)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 146 - 372
Target Start/End: Complemental strand, 38815639 - 38815413
Alignment:
Q  146 caccactcaagcttctttgtgcaaataggctcacttgtctttcagcacatggcttaattttaaccttctttttctaaactagatctgcttcatatggcat 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38815639 caccactcaagcttctttgtgcaaataggctcacttgtctttcagcacatggcttaattttaaccttctttttctaaactagatctgcttcatatggcat 38815540  T
Q  246 cgacttagcaaaatcaaagcaattatggtgtacggatgggtaggaggaaaacatgcatgtgtggggtatcaccacttgtgggattaggggtcggggcatt 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  38815539 cgacttagcaaaatcaaagcaattatggtgtacggatgggtaggaggaaaacatgcatgtgtggggtatcaccacttgtgggattaggggtcggggcttt 38815440  T
Q  346 tatggtaggacagacagccctaaaagc 372  Q
    |||||||||||||||||||||||||||    
T  38815439 tatggtaggacagacagccctaaaagc 38815413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 38815800 - 38815728
Alignment:
Q  78 taagatttagccaattgaaagttgaaatagcatcatagatcgcattctaccacaaggggcatttgcagcacca 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38815800 taagatttagccaattgaaagttgaaatagcatcatagatcgcattctaccacaaggggcatttgaagcacca 38815728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 38816009 - 38815946
Alignment:
Q  16 atggaatgctatagaactttagttagtattgcaataatcaatataatcatttcttaaccacata 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816009 atggaatgctatagaactttagttagtattgcaataatcaatataatcatttcttaaccacata 38815946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 149 - 267
Target Start/End: Complemental strand, 39456371 - 39456250
Alignment:
Q  149 cactcaagcttctttgtgcaaataggctcacttgtctttcagca-catggcttaattttaaccttctttttctaaactagatctgcttcat-at-ggcat 245  Q
    |||||||||||| |||||||||||||||||||||||||||||||  |||||| |||||||||  |||||||  ||| ||| || ||||||| || |||      
T  39456371 cactcaagcttcattgtgcaaataggctcacttgtctttcagcataatggctcaattttaacaatcttttttcaaaatagctcagcttcatgatgggccc 39456272  T
Q  246 cgacttagcaaaatcaaagcaa 267  Q
    |||||||| |||||||||||||    
T  39456271 cgacttagaaaaatcaaagcaa 39456250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 39456593 - 39456470
Alignment:
Q  20 aatgctatagaactttagttagtattgcaataatcaatataat--catttcttaaccacataagatttagccaattgaaagttgaaatagcatcatagat 117  Q
    |||||||||  ||| || |||||| || ||||||||| |||||  |||||||||| |||||||||||||| ||||||||||||||||||||| | ||  |    
T  39456593 aatgctataacactctaattagtactgtaataatcaacataatgtcatttcttaatcacataagatttagtcaattgaaagttgaaatagcaccgta-tt 39456495  T
Q  118 cgcattctaccacaaggggcatttg 142  Q
    | |||| ||||||||||| ||||||    
T  39456494 cacattttaccacaagggacatttg 39456470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 268 - 309
Target Start/End: Original strand, 25021688 - 25021729
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  25021688 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgg 25021729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 39464076 - 39464003
Alignment:
Q  146 caccactcaagcttctttgtgcaaataggctcacttgtctttcagca-catggcttaattttaaccttcttttt 218  Q
    |||||||||||||||||||||||||| |||||||||| | |||||||  |||||| ||||||| ||||||||||    
T  39464076 caccactcaagcttctttgtgcaaattggctcacttgacattcagcataatggctcaattttagccttcttttt 39464003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 268 - 371
Target Start/End: Complemental strand, 500460 - 500347
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgg----------ggtatcaccacttgtgggattaggggtcggggcatttatggtaggaca 357  Q
    ||||| |||| |||||||||| |||||||||||||||||| |          ||| |||||||||||||||||||| |||||| | |||| ||||||||     
T  500460 ttatgttgtatggatgggtagaaggaaaacatgcatgtgtagacttgagtgaggtttcaccacttgtgggattaggtgtcgggccttttacggtaggacc 500361  T
Q  358 gacagccctaaaag 371  Q
    ||||||||||||||    
T  500360 gacagccctaaaag 500347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 39434900 - 39434860
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtg 308  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  39434900 ttatggtgtacggatgggttggaggaaaacatgcatgtgtg 39434860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 371
Target Start/End: Original strand, 35739861 - 35739973
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtg----------tggggtatcaccacttgtgggattaggggtcggggcatttatggtaggaca 357  Q
    |||||||||| | ||||||||||||||||||||||||||          |||||| |||||||| |||||||||  ||||||| | |||| |||||||||    
T  35739861 ttatggtgtatgaatgggtaggaggaaaacatgcatgtgtggacttgactggggtttcaccactagtgggatta-aggtcgggccttttacggtaggaca 35739959  T
Q  358 gacagccctaaaag 371  Q
    |||| |||||||||    
T  35739960 gacatccctaaaag 35739973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 309
Target Start/End: Complemental strand, 3188202 - 3188161
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgg 309  Q
    ||||||||||||||||| | ||||||||||||||||||||||    
T  3188202 ttatggtgtacggatggattggaggaaaacatgcatgtgtgg 3188161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 309
Target Start/End: Original strand, 42922001 - 42922042
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgg 309  Q
    ||||||||||| |||||||||||||||||||  |||||||||    
T  42922001 ttatggtgtacagatgggtaggaggaaaacaaacatgtgtgg 42922042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 371
Target Start/End: Complemental strand, 8619998 - 8619934
Alignment:
Q  307 tggggtatcaccacttgtgggattaggggtcggggcatttatggtaggacagacagccctaaaag 371  Q
    |||||| ||||||||||||||||||| | ||| | | |||| | ||| |||||||||||||||||    
T  8619998 tggggtttcaccacttgtgggattagagatcgtgacttttacgatagaacagacagccctaaaag 8619934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 307
Target Start/End: Complemental strand, 40839781 - 40839745
Alignment:
Q  271 tggtgtacggatgggtaggaggaaaacatgcatgtgt 307  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  40839781 tggtatacgggtgggtaggaggaaaacatgcatgtgt 40839745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 149
Target Start/End: Original strand, 39407106 - 39407241
Alignment:
Q  16 atggaatgctatagaactttagttagtattgcaataatcaatataat--catttcttaaccacataagatttagccaattgaaagttgaaatagcatcat 113  Q
    |||||||||||||  |||||||||||||||  |||||||||||||||  |||||| |||||||||||||||||| ||||| |||||||||||| ||||||    
T  39407106 atggaatgctataacactttagttagtattctaataatcaatataatttcatttcctaaccacataagatttagtcaattcaaagttgaaatatcatcat 39407205  T
Q  114 agatcgcattctaccacaaggggcatttgcagcacc 149  Q
    ||||| |||||||||| ||| |||||||| ||||||    
T  39407206 agatcacattctaccaaaagcggcatttgaagcacc 39407241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 268 - 371
Target Start/End: Original strand, 4861863 - 4861976
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtg----------tggggtatcaccacttgtgggattaggggtcggggcatttatggtaggaca 357  Q
    |||||||||||||||||||||||| ||||||||||||||          ||| || ||||||||||| ||||||||||||  | ||||||||||||||||    
T  4861863 ttatggtgtacggatgggtaggagaaaaacatgcatgtgtggatttgactggtgtttcaccacttgttggattaggggtcttgacatttatggtaggaca 4861962  T
Q  358 gacagccctaaaag 371  Q
    ||||||| ||||||    
T  4861963 gacagccttaaaag 4861976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 268 - 371
Target Start/End: Original strand, 29169668 - 29169780
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtg----------tggggtatcaccacttgtgggattaggggtcggggcatttatggtaggaca 357  Q
    ||||||||||||||| |||||||||||||||||||||||          |||||| ||||||||| |||||||||| |||||| | ||||  ||||||||    
T  29169668 ttatggtgtacggataggtaggaggaaaacatgcatgtgtagacttgactggggtttcaccactt-tgggattaggtgtcgggccttttaccgtaggaca 29169766  T
Q  358 gacagccctaaaag 371  Q
    ||||||||| ||||    
T  29169767 gacagcccttaaag 29169780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 268 - 371
Target Start/End: Complemental strand, 34644799 - 34644686
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgg----------ggtatcaccacttgtgggattaggggtcggggcatttatggtaggaca 357  Q
    |||||||||| |||||||  ||||||||||||||||||||||          ||| |||||||||||||| |||||||||||||| |||| |||||||||    
T  34644799 ttatggtgtatggatgggctggaggaaaacatgcatgtgtggacttgactggggtttcaccacttgtgggtttaggggtcggggcttttacggtaggaca 34644700  T
Q  358 gacagccctaaaag 371  Q
      || |||||||||    
T  34644699 agcaaccctaaaag 34644686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 2764656 - 2764599
Alignment:
Q  314 tcaccacttgtgggattaggggtcggggcatttatggtaggacagacagccctaaaag 371  Q
    |||||||||||||| |||||||| || || |||||||||||| || ||| ||||||||    
T  2764656 tcaccacttgtgggtttaggggttggtgcttttatggtaggataggcagtcctaaaag 2764599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 37932148 - 37932205
Alignment:
Q  314 tcaccacttgtgggattaggggtcggggcatttatggtaggacagacagccctaaaag 371  Q
    |||||||||||||||||||||| |  ||| ||||  ||| ||||||||||||||||||    
T  37932148 tcaccacttgtgggattaggggccaaggcttttacagtaagacagacagccctaaaag 37932205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 309
Target Start/End: Original strand, 50161291 - 50161332
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgg 309  Q
    ||||||||||||| |||||| ||| |||||||||||||||||    
T  50161291 ttatggtgtacggttgggtaagagaaaaacatgcatgtgtgg 50161332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 304
Target Start/End: Original strand, 45659521 - 45659557
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatg 304  Q
    |||| |||||| |||||||||||||||||||||||||    
T  45659521 ttatagtgtacagatgggtaggaggaaaacatgcatg 45659557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 43 - 140
Target Start/End: Complemental strand, 20148332 - 20148233
Alignment:
Q  43 attgcaataatcaatataat--catttcttaaccacataagatttagccaattgaaagttgaaatagcatcatagatcgcattctaccacaaggggcatt 140  Q
    |||| |||||||||||||||  |||||||||||||||||||||||||  |||||||||| |||||||||||||||||| |||| ||||||| ||| ||||    
T  20148332 attgtaataatcaatataatatcatttcttaaccacataagatttagttaattgaaagtagaaatagcatcatagatctcattataccacaggggacatt 20148233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 268 - 374
Target Start/End: Original strand, 33691929 - 33692045
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgg----------ggtatcaccacttgtgggattaggggtcggggcatttatggtaggaca 357  Q
    ||||||||||||||||||| ||||||||||||||||||||||          ||| |||||||||||||| |||||||||||||| |||| |||||||||    
T  33691929 ttatggtgtacggatgggttggaggaaaacatgcatgtgtggacttgactgaggtttcaccacttgtgggtttaggggtcggggcttttacggtaggaca 33692028  T
Q  358 gacagccctaaaagctg 374  Q
    | ||| |||||||||||    
T  33692029 ggcaggcctaaaagctg 33692045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 268 - 371
Target Start/End: Complemental strand, 35310681 - 35310568
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgg----------ggtatcaccacttgtgggattaggggtcggggcatttatggtaggaca 357  Q
    ||||| ||||||||||||| ||||||||||||||||||||||          ||| |||||||||||||| |||||||||||||| |||| |||||||||    
T  35310681 ttatgatgtacggatgggttggaggaaaacatgcatgtgtggacttgattggggtttcaccacttgtgggtttaggggtcggggcttttacggtaggaca 35310582  T
Q  358 gacagccctaaaag 371  Q
    |||| |||||||||    
T  35310581 gacaaccctaaaag 35310568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 268 - 371
Target Start/End: Complemental strand, 27336926 - 27336813
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtg----------tggggtatcaccacttgtgggattaggggtcggggcatttatggtaggaca 357  Q
    ||||||||||||||||||| |||||||||||||||||||          |||||| |||||||||||||| |||||||| ||||| ||||   |||||||    
T  27336926 ttatggtgtacggatgggttggaggaaaacatgcatgtgtggacttgactggggtttcaccacttgtgggtttaggggtgggggcttttacaataggaca 27336827  T
Q  358 gacagccctaaaag 371  Q
    ||||||||||||||    
T  27336826 gacagccctaaaag 27336813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 268 - 374
Target Start/End: Original strand, 32269671 - 32269787
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtg----------tggggtatcaccacttgtgggattaggggtcggggcatttatggtaggaca 357  Q
    |||||||||||||||||||||||||||||||||||||||          |||||| ||||||||| ||| |||||| |||||| | ||||||||||||||    
T  32269671 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtagacttgactggggtttcaccacttctggaattaggtgtcgggccttttatggtaggaca 32269770  T
Q  358 gacagccctaaaagctg 374  Q
      || ||||||||||||    
T  32269771 tgcaaccctaaaagctg 32269787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 3114093 - 3114150
Alignment:
Q  314 tcaccacttgtgggattaggggtcggggcatttatggtaggacagacagccctaaaag 371  Q
    ||||||||  ||||||||||||||||||| |||| |||||||||| ||||||||||||    
T  3114093 tcaccactcatgggattaggggtcggggcttttacggtaggacaggcagccctaaaag 3114150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 371
Target Start/End: Original strand, 43115382 - 43115445
Alignment:
Q  308 ggggtatcaccacttgtgggattaggggtcggggcatttatggtaggacagacagccctaaaag 371  Q
    ||||| ||||||||  ||||||||| ||||||||| |||| ||||||| |||||||||||||||    
T  43115382 ggggtttcaccactcatgggattagaggtcggggcttttacggtaggatagacagccctaaaag 43115445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 309
Target Start/End: Original strand, 13166784 - 13166825
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgg 309  Q
    ||||||| ||||||||||| ||||||||||||||||||||||    
T  13166784 ttatggtctacggatgggttggaggaaaacatgcatgtgtgg 13166825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 309
Target Start/End: Complemental strand, 38446399 - 38446358
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgg 309  Q
    ||||||||||||||||||| |||| |||||||||||||||||    
T  38446399 ttatggtgtacggatgggttggagtaaaacatgcatgtgtgg 38446358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 309
Target Start/End: Complemental strand, 433525 - 433484
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgg 309  Q
    ||||||||||| ||||||| ||||||||| ||||||||||||    
T  433525 ttatggtgtacagatgggttggaggaaaatatgcatgtgtgg 433484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 309
Target Start/End: Complemental strand, 34335570 - 34335529
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgg 309  Q
    |||||||||||  ||| |||||||||||||||||||||||||    
T  34335570 ttatggtgtacaaatgagtaggaggaaaacatgcatgtgtgg 34335529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 309
Target Start/End: Complemental strand, 35456189 - 35456148
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgg 309  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||    
T  35456189 ttatggtgtacagatgggtaggaggtaaatatgcatgtgtgg 35456148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 300
Target Start/End: Original strand, 15291900 - 15291932
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatg 300  Q
    ||||||||||||| |||||||||||||||||||    
T  15291900 ttatggtgtacggctgggtaggaggaaaacatg 15291932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 268 - 374
Target Start/End: Original strand, 33220585 - 33220701
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtg----------gggtatcaccacttgtgggattaggggtcggggcatttatggtaggaca 357  Q
    ||||| |||||||||| || |||||||||||||||||||||          |||| |||||||||||||| |||||||||||||| |||| |||||||||    
T  33220585 ttatgatgtacggatgagttggaggaaaacatgcatgtgtgaatttgactggggtttcaccacttgtgggtttaggggtcggggcttttacggtaggaca 33220684  T
Q  358 gacagccctaaaagctg 374  Q
    |||||| ||||||||||    
T  33220685 gacagctctaaaagctg 33220701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 268 - 371
Target Start/End: Complemental strand, 12401564 - 12401451
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtg----------tggggtatcaccacttgtgggattaggggtcggggcatttatggtaggaca 357  Q
    |||||||||||||||||||||||||||||||||||||||          |||||| ||||||||| |||||||| || || |||| ||||||||||||||    
T  12401564 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtagacttgattggggtttcaccacttatgggattatggttcagggcttttatggtaggaca 12401465  T
Q  358 gacagccctaaaag 371  Q
      |||| |||||||    
T  12401464 agcagcactaaaag 12401451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 268 - 374
Target Start/End: Complemental strand, 34304729 - 34304613
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgg----------ggtatcaccacttgtgggattaggggtcggggcatttatggtaggaca 357  Q
    ||||||||||||||||||  ||||||||||||||||||||||          ||| |||||||||||||| ||||| |||||||| |||| ||| |||||    
T  34304729 ttatggtgtacggatgggctggaggaaaacatgcatgtgtggacttgattggggtttcaccacttgtgggtttaggagtcggggcttttacggttggaca 34304630  T
Q  358 gacagccctaaaagctg 374  Q
    |  ||||||||||||||    
T  34304629 gctagccctaaaagctg 34304613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 373
Target Start/End: Original strand, 357591 - 357706
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtggg----------gtatcaccacttgtgggattaggggtcggggcatttatggtaggaca 357  Q
    |||||||||| |||||||| |||| |||||||||||||||||           || |||||||||||||| ||||||||||| || |||| |||||||||    
T  357591 ttatggtgtatggatgggttggagcaaaacatgcatgtgtggacttgactggagtttcaccacttgtgggtttaggggtcggtgcttttacggtaggaca 357690  T
Q  358 gacagccctaaaagct 373  Q
    | ||||||||||||||    
T  357691 ggcagccctaaaagct 357706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 371
Target Start/End: Complemental strand, 959808 - 959700
Alignment:
Q  273 gtgtacggatgggtaggaggaaaacatgcatgtgtgg----------ggtatcaccacttgtgggattaggggtcggggcatttatggtaggacagacag 362  Q
    |||||||||||||||||||||||||||||||||||||           || ||||||||| |||||||||| |||||| | |||| ||||||||| |||     
T  959808 gtgtacggatgggtaggaggaaaacatgcatgtgtggacttgattgaagtttcaccacttatgggattaggtgtcgggccttttacggtaggacaaacaa 959709  T
Q  363 ccctaaaag 371  Q
    |||||||||    
T  959708 ccctaaaag 959700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 373
Target Start/End: Original strand, 28008917 - 28008976
Alignment:
Q  314 tcaccacttgtgggattaggggtcggggcatttatggtaggacagacagccctaaaagct 373  Q
    |||||||| |||||||||||||||||||| |||| |||||||||  || |||||||||||    
T  28008917 tcaccactcgtgggattaggggtcggggcttttacggtaggacatgcaaccctaaaagct 28008976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 309
Target Start/End: Original strand, 29337957 - 29337998
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgg 309  Q
    ||||||||| | ||||||||||||||||||||||||||||||    
T  29337957 ttatggtgtgcagatgggtaggaggaaaacatgcatgtgtgg 29337998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 307
Target Start/End: Complemental strand, 32115922 - 32115883
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgt 307  Q
    ||||||||||| |||| |||||||||||||||||||||||    
T  32115922 ttatggtgtacagatgagtaggaggaaaacatgcatgtgt 32115883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 301
Target Start/End: Original strand, 20693474 - 20693508
Alignment:
Q  267 attatggtgtacggatgggtaggaggaaaacatgc 301  Q
    |||||||||||| ||||||||||||||||||||||    
T  20693474 attatggtgtacagatgggtaggaggaaaacatgc 20693508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 371
Target Start/End: Complemental strand, 28543608 - 28543495
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgg----------ggtatcaccacttgtgggattaggggtcggggcatttatggtaggaca 357  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||          ||| ||||||||||||||||||| |||| || | |||| |||| ||||    
T  28543608 ttatgatgtacagatggataggaggaaaacatgcatgtgtggatttgactgaggtttcaccacttgtgggattagaggtcaggacttttacggtaagaca 28543509  T
Q  358 gacagccctaaaag 371  Q
    | ||||| ||||||    
T  28543508 ggcagccttaaaag 28543495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 374
Target Start/End: Original strand, 45607 - 45667
Alignment:
Q  314 tcaccacttgtgggattaggggtcggggcatttatggtaggacagacagccctaaaagctg 374  Q
    |||||||||||||||||||| |||||  | ||||  ||||||||| |||| ||||||||||    
T  45607 tcaccacttgtgggattaggtgtcggaccttttaccgtaggacaggcagctctaaaagctg 45667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 268 - 374
Target Start/End: Original strand, 50000799 - 50000915
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgg----------ggtatcaccacttgtgggattaggggtcggggcatttatggtaggaca 357  Q
    ||||||||||||||||||| ||||||||||||||||||||||          ||| |||||||||||||| | |||||| ||||| |||| |||||||||    
T  50000799 ttatggtgtacggatgggttggaggaaaacatgcatgtgtggacttgactggggtttcaccacttgtgggttaaggggtgggggcttttacggtaggaca 50000898  T
Q  358 gacagccctaaaagctg 374  Q
    |||||| ||||||||||    
T  50000899 gacagctctaaaagctg 50000915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 267 - 374
Target Start/End: Complemental strand, 31847321 - 31847204
Alignment:
Q  267 attatggtgtacggatgggtaggaggaaaacatgcatgtgtgg----------ggtatcaccacttgtgggattaggggtcggggcatttatggtaggac 356  Q
    |||||||||||| ||||| | ||||||||||||||||||||||          ||| |||||||||||||| |||||||| ||||| ||||  |||||||    
T  31847321 attatggtgtacagatggattggaggaaaacatgcatgtgtggacttgactagggtttcaccacttgtgggtttaggggtgggggcttttacagtaggac 31847222  T
Q  357 agacagccctaaaagctg 374  Q
    || |||||||||||||||    
T  31847221 aggcagccctaaaagctg 31847204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 374
Target Start/End: Complemental strand, 53619819 - 53619703
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtg----------tggggtatcaccacttgtgggattaggggtcggggcatttatggtaggaca 357  Q
    |||||||||||||||| || |||||||||||||||||||          |||||| |||||||||||||| |||| ||| ||||| ||||  ||||||||    
T  53619819 ttatggtgtacggatgagttggaggaaaacatgcatgtgtggacttgactggggtttcaccacttgtgggtttagaggtgggggcttttacagtaggaca 53619720  T
Q  358 gacagccctaaaagctg 374  Q
    | || ||||||||||||    
T  53619719 ggcaaccctaaaagctg 53619703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 374
Target Start/End: Complemental strand, 132571 - 132502
Alignment:
Q  307 tggggtatcaccacttgtgggattaggggtcggggcatttatg--gtaggacagacagccctaaaagctg 374  Q
    |||||| ||||||||||| ||||||||||||||| | |||| |  ||||||||| |||||||||||||||    
T  132571 tggggtttcaccacttgttggattaggggtcgggacttttacggtgtaggacaggcagccctaaaagctg 132502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 363
Target Start/End: Complemental strand, 3330183 - 3330078
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgg----------ggtatcaccacttgtgggattaggggtcggggcatttatggtaggaca 357  Q
    ||||||||||||||||| | |||||||||| |||||||||||          ||| |||||||||||||| |||||||| ||||| |||| |||||||||    
T  3330183 ttatggtgtacggatggattggaggaaaacgtgcatgtgtggacttgactggggtttcaccacttgtgggtttaggggtgggggcttttacggtaggaca 3330084  T
Q  358 gacagc 363  Q
    | ||||    
T  3330083 ggcagc 3330078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 302
Target Start/End: Complemental strand, 53098639 - 53098605
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgca 302  Q
    |||||||||||||||||||||||||||||||||||    
T  53098639 ttatggtgtacggatgggtaggaggaaaacatgca 53098605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 309
Target Start/End: Complemental strand, 12053644 - 12053603
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgg 309  Q
    ||||| ||||| ||||||||||||||||||||||||||||||    
T  12053644 ttatgttgtacagatgggtaggaggaaaacatgcatgtgtgg 12053603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 309
Target Start/End: Complemental strand, 16957769 - 16957728
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgg 309  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  16957769 ttatggtgtacggatgggtaggtgtaaaacatgcatgtgtgg 16957728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 309
Target Start/End: Complemental strand, 18534633 - 18534592
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgg 309  Q
    ||||||| ||||||||||||| ||||||||||||||||||||    
T  18534633 ttatggtatacggatgggtagaaggaaaacatgcatgtgtgg 18534592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 25504526 - 25504489
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgt 305  Q
    |||||||||||||||||||||||| |||||||||||||    
T  25504526 ttatggtgtacggatgggtaggagaaaaacatgcatgt 25504489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 309
Target Start/End: Complemental strand, 25706742 - 25706701
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgg 309  Q
    ||||||||||| |||||||||||| |||||||||||||||||    
T  25706742 ttatggtgtacagatgggtaggagaaaaacatgcatgtgtgg 25706701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 309
Target Start/End: Original strand, 56461981 - 56462022
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgg 309  Q
    |||||||||||||||| ||||| |||||||||||||||||||    
T  56461981 ttatggtgtacggatgagtaggtggaaaacatgcatgtgtgg 56462022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 6865687 - 6865727
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtg 308  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  6865687 ttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 6865727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 371
Target Start/End: Original strand, 55933386 - 55933449
Alignment:
Q  308 ggggtatcaccacttgtgggattaggggtcggggcatttatggtaggacagacagccctaaaag 371  Q
    ||||| ||||| |||||||| ||| ||||| |||| |||| |||||||||| ||||||||||||    
T  55933386 ggggtttcaccccttgtgggtttaagggtcagggcttttacggtaggacagtcagccctaaaag 55933449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 308
Target Start/End: Original strand, 12918248 - 12918286
Alignment:
Q  270 atggtgtacggatgggtaggaggaaaacatgcatgtgtg 308  Q
    |||||||| ||||||||| ||||||||||||||||||||    
T  12918248 atggtgtatggatgggtaagaggaaaacatgcatgtgtg 12918286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 371
Target Start/End: Complemental strand, 26521721 - 26521608
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtggg----------gtatcaccacttgtgggattaggggtcggggcatttatggtaggaca 357  Q
    ||||||||||| || ||||||||||||||||||||||| |||           || ||| |||||||||||||||||||| |  | ||||||||||||||    
T  26521721 ttatggtgtacagacgggtaggaggaaaacatgcatgtatggacttgactggagtttcatcacttgtgggattaggggtcagaccttttatggtaggaca 26521622  T
Q  358 gacagccctaaaag 371  Q
     ||| |||||||||    
T  26521621 aacaaccctaaaag 26521608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 268 - 374
Target Start/End: Original strand, 39583103 - 39583219
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgg----------ggtatcaccacttgtgggattaggggtcggggcatttatggtaggaca 357  Q
    |||| |||||||||||||||||||||||||||||||| ||||          ||| | |||||||||||||||| |||||||| |||||||||||||| |    
T  39583103 ttatagtgtacggatgggtaggaggaaaacatgcatgcgtggacttgacttaggttttaccacttgtgggattaagggtcgggccatttatggtaggata 39583202  T
Q  358 gacagccctaaaagctg 374  Q
    | |||||||||||||||    
T  39583203 ggcagccctaaaagctg 39583219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 29862030 - 29861990
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtg 308  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  29862030 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtg 29861990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 271 - 307
Target Start/End: Complemental strand, 53785939 - 53785903
Alignment:
Q  271 tggtgtacggatgggtaggaggaaaacatgcatgtgt 307  Q
    |||||||||||||||||||||||||||||||||||||    
T  53785939 tggtgtacggatgggtaggaggaaaacatgcatgtgt 53785903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 307
Target Start/End: Complemental strand, 13582741 - 13582703
Alignment:
Q  269 tatggtgtacggatgggtaggaggaaaacatgcatgtgt 307  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  13582741 tatggtgtatggatgggtaggaggaaaacatgcatgtgt 13582703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 370
Target Start/End: Complemental strand, 7901091 - 7900979
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgg----------ggtatcaccacttgtgggattaggggtcggggcatttatggtaggaca 357  Q
    ||||||||||  |||| |||||||||||||||||||||||||          ||| ||||||||||||||||||||||| ||| | |||| ||||||||     
T  7901091 ttatggtgtatagatgtgtaggaggaaaacatgcatgtgtggacttgactggggtttcaccacttgtgggattaggggttgggtcttttacggtaggacg 7900992  T
Q  358 gacagccctaaaa 370  Q
    || | ||||||||    
T  7900991 gatatccctaaaa 7900979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 372
Target Start/End: Complemental strand, 38146240 - 38146175
Alignment:
Q  307 tggggtatcaccacttgtgggattaggggtcggggcatttatggtaggacagacagccctaaaagc 372  Q
    |||||| |||| ||||||||||||||||||||| || || | |||||||||  |||||||||||||    
T  38146240 tggggtttcacgacttgtgggattaggggtcggagctttgagggtaggacatgcagccctaaaagc 38146175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 307
Target Start/End: Complemental strand, 49018196 - 49018157
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgt 307  Q
    ||||||||||||||| |||| |||||||||||||||||||    
T  49018196 ttatggtgtacggattggtacgaggaaaacatgcatgtgt 49018157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 309
Target Start/End: Complemental strand, 37992565 - 37992524
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgg 309  Q
    ||||| |||||||||||||||||||||||||||  |||||||    
T  37992565 ttatgatgtacggatgggtaggaggaaaacatgtgtgtgtgg 37992524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 371
Target Start/End: Original strand, 46940709 - 46940757
Alignment:
Q  323 gtgggattaggggtcggggcatttatggtaggacagacagccctaaaag 371  Q
    |||||||||||||||| ||  |||||||||||||||||| | |||||||    
T  46940709 gtgggattaggggtcgaggattttatggtaggacagacaactctaaaag 46940757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 54508259 - 54508298
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtg 308  Q
    |||||||||||||||||||| || |||||||||||||||||    
T  54508259 ttatggtgtacggatgggta-gaagaaaacatgcatgtgtg 54508298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 13147 - 13270
Alignment:
Q  20 aatgctatagaactttagttagtattgcaataatcaatataat--catttcttaaccacataagatttagccaattgaaagttgaaatagcatcatagat 117  Q
    |||||||||  ||| || |||||| || ||||||||| |||||  |||||||||| |||||||||||||| ||||||||||||||||||||| | ||  |    
T  13147 aatgctataacactctaattagtactgtaataatcaacataatgtcatttcttaatcacataagatttagtcaattgaaagttgaaatagcaccgta-tt 13245  T
Q  118 cgcattctaccacaaggggcatttg 142  Q
    | |||| ||||||||||| ||||||    
T  13246 cacattttaccacaagggacatttg 13270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 149 - 267
Target Start/End: Original strand, 13369 - 13490
Alignment:
Q  149 cactcaagcttctttgtgcaaataggctcacttgtctttcagca-catggcttaattttaaccttctttttctaaactagatctgcttcat-at-ggcat 245  Q
    |||||||||||| |||||||||||||||||||||||||||||||  |||||| |||||||||  |||||||  ||| ||| || ||||||| || |||      
T  13369 cactcaagcttcattgtgcaaataggctcacttgtctttcagcataatggctcaattttaacaatcttttttcaaaatagctcagcttcatgatgggccc 13468  T
Q  246 cgacttagcaaaatcaaagcaa 267  Q
    |||||||| |||||||||||||    
T  13469 cgacttagaaaaatcaaagcaa 13490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 146 - 218
Target Start/End: Original strand, 24425 - 24498
Alignment:
Q  146 caccactcaagcttctttgtgcaaataggctcacttgtctttcagca-catggcttaattttaaccttcttttt 218  Q
    |||||||||||||||||||||||||| |||||||||| | |||||||  |||||| ||||||| ||||||||||    
T  24425 caccactcaagcttctttgtgcaaattggctcacttgacattcagcataatggctcaattttagccttcttttt 24498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 268 - 374
Target Start/End: Complemental strand, 4501491 - 4501375
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgt----------ggggtatcaccacttgtgggattaggggtcggggcatttatggtaggaca 357  Q
    ||||||||||||||| ||||||||||||||||||||||||          ||||| |||||||||||||||||||| |||||| | ||||  ||||||||    
T  4501491 ttatggtgtacggataggtaggaggaaaacatgcatgtgtagacttgactggggtttcaccacttgtgggattaggtgtcgggccttttaccgtaggaca 4501392  T
Q  358 gacagccctaaaagctg 374  Q
     ||| ||||||||||||    
T  4501391 aacaaccctaaaagctg 4501375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 268 - 374
Target Start/End: Original strand, 28517161 - 28517277
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgg----------ggtatcaccacttgtgggattaggggtcggggcatttatggtaggaca 357  Q
    ||||||||||||||||||| ||||||||||||| ||||||||          ||| |||||||||||||| |||||||| ||||| ||||  ||||||||    
T  28517161 ttatggtgtacggatgggttggaggaaaacatgtatgtgtggacttgactggggtttcaccacttgtgggtttaggggtgggggcttttacagtaggaca 28517260  T
Q  358 gacagccctaaaagctg 374  Q
    |||| ||||||||||||    
T  28517261 gacaaccctaaaagctg 28517277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 268 - 374
Target Start/End: Complemental strand, 5825504 - 5825388
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgg----------ggtatcaccacttgtgggattaggggtcggggcatttatggtaggaca 357  Q
    |||||||||||| |||||| ||||||||||||||||||||||          ||| |||||||||||||| |||||||||| ||| |||| || ||||||    
T  5825504 ttatggtgtacgaatgggttggaggaaaacatgcatgtgtggacttgactggggtttcaccacttgtgggtttaggggtcgaggcttttacggcaggaca 5825405  T
Q  358 gacagccctaaaagctg 374  Q
    |  ||||||||||||||    
T  5825404 ggaagccctaaaagctg 5825388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 361
Target Start/End: Complemental strand, 43857107 - 43857004
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgg----------ggtatcaccacttgtgggattaggggtcggggcatttatggtaggaca 357  Q
    |||||||||||||||||||||||| ||||||| |||| ||||          ||| ||||||||||||||||||||||||||||| ||||  ||||||||    
T  43857107 ttatggtgtacggatgggtaggagaaaaacatacatgcgtggacttgacgggggtttcaccacttgtgggattaggggtcggggcttttacagtaggaca 43857008  T
Q  358 gaca 361  Q
    ||||    
T  43857007 gaca 43857004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 371
Target Start/End: Original strand, 45613716 - 45613829
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtg----------tggggtatcaccacttgtgggattaggggtcggggcatttatggtaggaca 357  Q
    ||||| |||||| ||||||||||||||||||||||||||          |||||| ||||||||||| |||||||| |||||| | |||   ||||||||    
T  45613716 ttatgatgtacgaatgggtaggaggaaaacatgcatgtgtagacttgactggggtttcaccacttgtaggattaggtgtcgggcctttttccgtaggaca 45613815  T
Q  358 gacagccctaaaag 371  Q
    |||| |||||||||    
T  45613816 gacaaccctaaaag 45613829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 10905335 - 10905298
Alignment:
Q  271 tggtgtacggatgggtaggaggaaaacatgcatgtgtg 308  Q
    |||||||||||||| |||||||||||||||||||||||    
T  10905335 tggtgtacggatggataggaggaaaacatgcatgtgtg 10905298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 374
Target Start/End: Complemental strand, 3676873 - 3676756
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgt----------ggggtatcaccacttgtgggattaggggtcggggcatttatggtaggaca 357  Q
    |||||||||| ||||||||||| ||||||||||| |||||          ||||| |||||||||||||||||||| |||||  | ||||  ||||||||    
T  3676873 ttatggtgtagggatgggtaggtggaaaacatgcttgtgtagacttgactggggtttcaccacttgtgggattaggtgtcggtccttttaccgtaggaca 3676774  T
Q  358 -gacagccctaaaagctg 374  Q
     | |||||||||||||||    
T  3676773 ggccagccctaaaagctg 3676756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 372
Target Start/End: Original strand, 21326768 - 21326826
Alignment:
Q  314 tcaccacttgtgggattaggggtcggggcatttatggtaggacagacagccctaaaagc 372  Q
    |||||||||||||||||||| |||||  | ||||  |||||||| ||||||||||||||    
T  21326768 tcaccacttgtgggattaggtgtcggaccttttaccgtaggacaaacagccctaaaagc 21326826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 372
Target Start/End: Complemental strand, 22198170 - 22198105
Alignment:
Q  307 tggggtatcaccacttgtgggattaggggtcggggcatttatggtaggacagacagccctaaaagc 372  Q
    |||||| || ||||||||| ||||||| |||||| | |||||||||||||   |||||||||||||    
T  22198170 tggggtttcgccacttgtgcgattaggtgtcgggccttttatggtaggacgcgcagccctaaaagc 22198105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 372
Target Start/End: Original strand, 22239651 - 22239716
Alignment:
Q  307 tggggtatcaccacttgtgggattaggggtcggggcatttatggtaggacagacagccctaaaagc 372  Q
    |||||| || ||||||||| ||||||| |||||| | |||||||||||||   |||||||||||||    
T  22239651 tggggtttcgccacttgtgcgattaggtgtcgggccttttatggtaggacgcgcagccctaaaagc 22239716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 370
Target Start/End: Complemental strand, 32584783 - 32584722
Alignment:
Q  309 gggtatcaccacttgtgggattaggggtcggggcatttatggtaggacagacagccctaaaa 370  Q
    |||| ||||| ||||||||||||||||||||||  |||| |||||||||  || ||||||||    
T  32584783 gggtttcacctcttgtgggattaggggtcggggattttacggtaggacatgcaaccctaaaa 32584722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 307 - 374
Target Start/End: Complemental strand, 44686603 - 44686536
Alignment:
Q  307 tggggtatcaccacttgtgggattaggggtcggggcatttatggtaggacagacagccctaaaagctg 374  Q
    |||||| |||||||||||||| |||||||||||||| |||| | |||||||||||| |||||||||||    
T  44686603 tggggtttcaccacttgtgggtttaggggtcggggcttttacgataggacagacagtcctaaaagctg 44686536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 12081292 - 12081236
Alignment:
Q  62 tcatttcttaaccacataagatttagccaattgaaagttgaaatagcatcatagatc 118  Q
    |||| |||||| |||||||||||||| ||| ||||||||||||||||||||||||||    
T  12081292 tcatatcttaagcacataagatttagtcaactgaaagttgaaatagcatcatagatc 12081236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 307
Target Start/End: Complemental strand, 17344871 - 17344832
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgt 307  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  17344871 ttatggtgtacggatgggtaggaggaaaacatgcatgtgt 17344832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 307
Target Start/End: Original strand, 18744828 - 18744867
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgt 307  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  18744828 ttatggtgtacggatgggtaggaggaaaacatgcatgtgt 18744867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 309
Target Start/End: Complemental strand, 27502594 - 27502553
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgg 309  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  27502594 ttatggtgtacggatgggttggaggaaaacatgcatgtgtgg 27502553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 309
Target Start/End: Complemental strand, 28225233 - 28225192
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgg 309  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  28225233 ttatggtgtacggatgggttggaggaaaacatgcatgtgtgg 28225192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 307
Target Start/End: Original strand, 23484812 - 23484851
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgt 307  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  23484812 ttatgatgtacggatgggtaggaggaaaacatgcatgtgt 23484851  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 147 - 270
Target Start/End: Complemental strand, 12081135 - 12081012
Alignment:
Q  147 accactcaagcttctttgtgcaaataggctcacttgtctttcagca-catggcttaattttaaccttctttttctaaactagatctgcttcat-atggca 244  Q
    |||||| |||||  |||| |||||| |||||||||||| |||| ||  ||||||||||||||  |||||||||| ||||||| |||||||||| ||| |     
T  12081135 accactgaagctaatttgagcaaattggctcacttgtc-ttcaacataatggcttaattttagacttctttttc-aaactagctctgcttcatgatgtcc 12081038  T
Q  245 tcgacttagcaaaatcaaagcaatta 270  Q
     | ||||||||||||||||| |||||    
T  12081037 ccaacttagcaaaatcaaagtaatta 12081012  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 12088174 - 12088078
Alignment:
Q  16 atggaatgctatagaactttagttagtattgcaataatcaatataa--tcatttcttaaccacataagatttagccaattgaaagttgaaatagcat 110  Q
    ||||||||||| |  ||||||| |||||||| ||||||||||||||  |  |||||||||||  |||  ||||| ||||||||||| ||||||||||    
T  12088174 atggaatgctacaacactttagctagtattgtaataatcaatataatgttttttcttaaccatgtaatgtttagtcaattgaaagtagaaatagcat 12088078  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 374
Target Start/End: Complemental strand, 3825904 - 3825844
Alignment:
Q  314 tcaccacttgtgggattaggggtcggggcatttatggtaggacagacagccctaaaagctg 374  Q
    ||||| |||||||||||||||||| || | |||| |||| |||||| ||||||||||||||    
T  3825904 tcaccccttgtgggattaggggtcaggacttttacggtatgacagagagccctaaaagctg 3825844  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 20142613 - 20142653
Alignment:
Q  267 attatggtgtacggatgggtaggaggaaaacatgcatgtgt 307  Q
    ||||||||||||||||||||||| ||||||||||| |||||    
T  20142613 attatggtgtacggatgggtaggtggaaaacatgcttgtgt 20142653  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 307
Target Start/End: Original strand, 4412940 - 4412979
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgt 307  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  4412940 ttatggtgtacggatgggtaggtggaaaacatgcttgtgt 4412979  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 307
Target Start/End: Original strand, 19161657 - 19161696
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgt 307  Q
    ||||| |||| |||||||||||||||||||||||||||||    
T  19161657 ttatgatgtaaggatgggtaggaggaaaacatgcatgtgt 19161696  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 12087948 - 12087859
Alignment:
Q  149 cactcaagcttctttgtgcaaataggctcacttgtctttcagca-catggcttaattttaaccttctttttctaaactagatctgcttcat 238  Q
    ||||||||||| ||  ||||||| | |||| |||||||||||||  ||||||  |||||| ||||||||||| ||||||||| ||||||||    
T  12087948 cactcaagctttttaatgcaaattgtctcatttgtctttcagcataatggctatattttagccttctttttc-aaactagatatgcttcat 12087859  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 309
Target Start/End: Original strand, 10579653 - 10579694
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgg 309  Q
    ||||||||||||  |||||||||||||||||||||| |||||    
T  10579653 ttatggtgtacgagtgggtaggaggaaaacatgcatttgtgg 10579694  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 374
Target Start/End: Complemental strand, 5532584 - 5532536
Alignment:
Q  326 ggattaggggtcggggcatttatggtaggacagacagccctaaaagctg 374  Q
    ||||||||||||||||  |||| |||||||||  |||||||||||||||    
T  5532584 ggattaggggtcggggattttacggtaggacatgcagccctaaaagctg 5532536  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 374
Target Start/End: Original strand, 41867838 - 41867898
Alignment:
Q  314 tcaccacttgtgggattaggggtcggggcatttatggtaggacagacagccctaaaagctg 374  Q
    |||| ||||||||||||||| |||||  | ||||| ||||||||| ||||| |||||||||    
T  41867838 tcacgacttgtgggattaggtgtcggaccttttatcgtaggacaggcagccttaaaagctg 41867898  T

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Target: scaffold1768 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 370
Target Start/End: Original strand, 58 - 170
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgt----------gtggggtatcaccacttgtgggattaggggtcggggcatttatggtaggaca 357  Q
    ||||| ||||||||||||||||||||||||||||||||           |||||| |||||||||||||||||| | |||||| | ||||  ||||||||    
T  58 ttatgatgtacggatgggtaggaggaaaacatgcatgtatagacttgactggggtttcaccacttgtgggattaagtgtcgggccttttactgtaggaca 157  T
Q  358 gacagccctaaaa 370  Q
    | |||||||||||    
T  158 ggcagccctaaaa 170  T

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Target: scaffold0186 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 306
Target Start/End: Complemental strand, 19954 - 19916
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaacatgcatgtg 306  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  19954 ttatggtgtacggataggtaggaggaaaacatgcatgtg 19916  T

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Target: scaffold0490 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 371
Target Start/End: Complemental strand, 6517 - 6454
Alignment:
Q  307 tggggtatcaccacttgtgggattaggggtcggggcatttatggtaggacagacagccctaaaag 371  Q
    |||||| |||||||||||||||||| |||||||  | ||||  ||||||||||||||||||||||    
T  6517 tggggtttcaccacttgtgggatta-gggtcggaccttttaccgtaggacagacagccctaaaag 6454  T

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Target: scaffold0148 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 358
Target Start/End: Complemental strand, 33484 - 33382
Alignment:
Q  268 ttatggtgtacggatgggtaggaggaaaac--atgcatgtg----------tggggtatcaccacttgtgggattaggggtcggggcatttatggtagga 355  Q
    ||||||||||||||||||||||||||||||  |||||||||          |||||| ||||||||| |||||||||| |||||| | |||| |||||||    
T  33484 ttatggtgtacggatgggtaggaggaaaacatatgcatgtgcaaacttgattggggtttcaccacttatgggattaggtgtcgggccttttacggtagga 33385  T
Q  356 cag 358  Q
    |||    
T  33384 cag 33382  T

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