View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_high_42 (Length: 381)
Name: NF19615_high_42
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_high_42 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 16 - 367
Target Start/End: Complemental strand, 21428455 - 21428101
Alignment:
| Q |
16 |
atttagatgttggtaataagtaggctacttggtattcatcaggaaaagctattcaggcaaaatgtaaggctagttgttacaatagaagttatcatcttat |
115 |
Q |
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| T |
21428455 |
atttagatgttggtaacaagtaggctacttggtattcatcaggaaaagctattcaggcaaaatgtaaggctagttgttacaatagaagttatcatcttat |
21428356 |
T |
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| Q |
116 |
ggaaacggagaaatagcaaagctttttacagaaatagagctgcaaagagcaacagatatctacaacgagaataggttcctcagtcaagagggttatggca |
215 |
Q |
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| T |
21428355 |
ggaaacggagaaatagcaaagctttttacagaaatagagctgcaaagagcagcagatatctacaacgagaataggttcctcagtcaagagggttatggca |
21428256 |
T |
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| Q |
216 |
tggtgtacaaaggaacgtcgccggatggaaccataatcacagttaaaaagtcaaaacagtttgacagtaagaaaagattttacggacatccaagtctcac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21428255 |
tggtgtacaaaggaacgtcgccggatggaaccataatcacagttaaaaagtcaaaacagtttgacagtaagaaaagattttacggacatccaagtctcac |
21428156 |
T |
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| Q |
316 |
agattttagaagccacaattcttat---cgaagtaaggaaagatgtgaaataatt |
367 |
Q |
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| T |
21428155 |
agattttagaagccacaattcttatggaagaagtaaggaaagatgtgaaataatt |
21428101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 51 - 271
Target Start/End: Original strand, 30105609 - 30105828
Alignment:
| Q |
51 |
tcatcaggaaaagctattcaggcaaaatgtaaggctagttgttacaatagaagttatcatcttatggaaacggagaaatagcaaagctttttacagaaat |
150 |
Q |
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| T |
30105609 |
tcataaggaaaagttattcaggcaaaacggt-ggttacttgttacaagagaagttatcatcttatggaaatggagaaatggcaaagctttttacggcaga |
30105707 |
T |
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| Q |
151 |
agagctgcaaagagcaacagatatctacaacgagaataggttcctcagtcaagagggttatggcatggtgtacaaaggaacgtcgccggatggaaccata |
250 |
Q |
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| T |
30105708 |
agagctgcaaagagcaacagataactacaaccggagtagatttcttggtcaaggtggctatggcacggtgtacaaaggaatgttaccagatggaaccata |
30105807 |
T |
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| Q |
251 |
atcacagttaaaaagtcaaaa |
271 |
Q |
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| T |
30105808 |
gttgcagttaaaaagtcaaaa |
30105828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 47 - 282
Target Start/End: Original strand, 30115696 - 30115930
Alignment:
| Q |
47 |
gtattcatcaggaaaagctattcaggcaaaatgtaaggctagttgttacaatagaagttatcatcttatggaaacggagaaatagcaaagctttttacag |
146 |
Q |
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|||||| | |||||||| ||||||||||||| | || || ||||||||| ||||||||||||| |||||||| |||||||| |||||||||||||||| |
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| T |
30115696 |
gtattcgtaaggaaaagttattcaggcaaaacggt-ggttacttgttacaagagaagttatcatcatatggaaatggagaaatggcaaagctttttacag |
30115794 |
T |
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| Q |
147 |
aaatagagctgcaaagagcaacagatatctacaacgagaataggttcctcagtcaagagggttatggcatggtgtacaaaggaacgtcgccggatggaac |
246 |
Q |
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| T |
30115795 |
cagaggagctccaaagagcaacagatgactacaaccaaagtaggtttcttggtcaaggcggctatggcacagtgtacaaaggaatgctaccagatggaac |
30115894 |
T |
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| Q |
247 |
cataatcacagttaaaaagtcaaaacagtttgacag |
282 |
Q |
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|||| || ||||||||||||||||||| ||||||| |
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| T |
30115895 |
catagtcgcagttaaaaagtcaaaacaccttgacag |
30115930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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