View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_high_46 (Length: 372)
Name: NF19615_high_46
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_high_46 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 1539925 - 1540277
Alignment:
| Q |
1 |
agagagaccacaagcagcaggaagagtggcagcttttgtaacattcaaaacaacaccaagattagcactgtttttgagagaatcacaaagacaagtagga |
100 |
Q |
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| T |
1539925 |
agagagaccacaagcagcaggaagggtggcagcttttgtaacattcaaaacaacaccaagattagcactgtttttgagagaatcacaaagacaagtagga |
1540024 |
T |
|
| Q |
101 |
gatgttttcagaacagttttcaagccagaacagcatgcccctgatggtttggttatggtactgtcatttgaaacaaatgacaaacaatcagccatgatga |
200 |
Q |
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| T |
1540025 |
gatgttttcagaacagttttcaagccagaacagcatgcccctgatggtttggttatggtactgtcatttgaaacaaatgacaaacaatcagccatgatga |
1540124 |
T |
|
| Q |
201 |
caacaatggttgaacaatcagcagagggtgatggagcatcacgtgctgatgaagcactaggaaaatcaacggcccagatgacaaaaatgcagagaatgaa |
300 |
Q |
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| T |
1540125 |
caacaatggttgaacaatcagcagagggtgatggagcatcacgtgctgatgaagcactaggaaaatcaacggcccagatgacaaaaatggagagaatgaa |
1540224 |
T |
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| Q |
301 |
tgaaaactttgaggccatgatgaa-gaatgagagattgttgtgatgtgtagtt |
352 |
Q |
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| T |
1540225 |
tgaaaactttgaggccatggagaaggaatgagagattgttgtgatgtgtagtt |
1540277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 320
Target Start/End: Complemental strand, 1642129 - 1642084
Alignment:
| Q |
275 |
cagatgacaaaaatgcagagaatgaatgaaaactttgaggccatga |
320 |
Q |
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| T |
1642129 |
cagatgacaataatgctgagaatgagtgaaaactttgatgccatga |
1642084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 29804009 - 29804130
Alignment:
| Q |
14 |
gcagcaggaagagtggcagcttttgtaacattcaaaacaacaccaagattagcactgtttttgagagaatcacaaagacaagtaggagatgttttcagaa |
113 |
Q |
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||||||||||||| | |||||| ||||||||||| |||||||||| | |||||| | |||| || ||||| ||||||| ||||| ||||| || | |
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| T |
29804009 |
gcagcaggaagagaagtagctttggtaacattcaagacaacaccaaactgagcactactcttgaaagcctcacagagacaagaaggagcagttttgagca |
29804108 |
T |
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| Q |
114 |
cagttttcaagccagaacagca |
135 |
Q |
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||| |||||| ||||||||||| |
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| T |
29804109 |
cagatttcaaaccagaacagca |
29804130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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