View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_high_52 (Length: 355)
Name: NF19615_high_52
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_high_52 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 21 - 231
Target Start/End: Original strand, 30118422 - 30118625
Alignment:
| Q |
21 |
tatagggtgtggctcaaaattttcttgaaggctccttctttcatttaaagctcttgattttcttacaatgttgtcaagcactaccttatgagttatgcct |
120 |
Q |
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| T |
30118422 |
tatagggtgtggctcaaaattttcttgaaggctccttctttcttttaaagctcttgattttcttacaatgttgtcaagcactaccttat-------gcct |
30118514 |
T |
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| Q |
121 |
aagaagcaaaagtttcagattcgctgaagactgacagaatccgtcatggacaacatctcgaggtacaatggttgaattaagcaaagataatgtagacaaa |
220 |
Q |
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| T |
30118515 |
aagaagcaatagtttcagattcgctgaagactgacagaatccgtcatggacaacatcttgaggtacaatggttgaattaagcaaaaataatgtagacaaa |
30118614 |
T |
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| Q |
221 |
caactagtgga |
231 |
Q |
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| T |
30118615 |
caactagtgga |
30118625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 30119023 - 30119081
Alignment:
| Q |
288 |
taaaatcaagagtttattgaactcacgcaagttaacttgtttttatgacctagaattat |
346 |
Q |
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| T |
30119023 |
taaaatcaagagtttattgaacacacgcaagttaacttgtttttatgacctagaattat |
30119081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 30133003 - 30133053
Alignment:
| Q |
57 |
tctttcatttaaagctcttgattttcttacaatgttgtcaagcactacctt |
107 |
Q |
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| T |
30133003 |
tctttcatttgaagctcttgttttgcttacaatgttgtcaagtactgcctt |
30133053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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