View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_high_56 (Length: 351)
Name: NF19615_high_56
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_high_56 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 50202523 - 50202223
Alignment:
| Q |
19 |
agaaagaacaaagtggattattttcaatgacagtgataaatgaacaccccacttccactttttgtactctccgtgacatctagttaaccacgatcaaaga |
118 |
Q |
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| T |
50202523 |
agaaagaacaaagtggattattttcaatgacagtgataaatgaacaccccacttccactttttgtactctcggtgacatctagttaaccacgatcaaaga |
50202424 |
T |
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| Q |
119 |
tggataatttaatttacgatcaaatttacggttagttcaatagcgtgagttagccacaatacatgaattaaattaatcatgttttcaactgaatttttta |
218 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
50202423 |
tggataatttaatttacg------------gttagttcaatagcgtgaattagccacaatacatgaactaaattaatcatgttttcaactgaattttt-a |
50202337 |
T |
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| Q |
219 |
tacacagtatcgtgggtgtgtgaaaaatgattttactacctgataatgcactgtgttaccaaattacaatcaaacacaaaattcaataaaattcttacag |
318 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50202336 |
tacagagtatcgtgggtgtgtgaaaaatgattttactacctgataatgcattgtgttaccaaattacaatcaaacacaaaattcaataaaattcttacat |
50202237 |
T |
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| Q |
319 |
ctctgctgtttgtg |
332 |
Q |
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||||||| |||||| |
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| T |
50202236 |
ctctgctatttgtg |
50202223 |
T |
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