View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19615_high_6 (Length: 671)
Name: NF19615_high_6
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 595; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 18 - 662
Target Start/End: Original strand, 47819746 - 47820387
Alignment:
| Q |
18 |
gaggtgggggttggaagagtccggaatgttctcagttaaatctacatatggcaaattagaggcggttgtggttagggaagatttgtggagtgtggaggag |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47819746 |
gaggtgggggttggaagagtctggaatgttctcagttaaatctacatatggcaaattagaggcggttgtggttagggaagatttgtggagtgtggaggag |
47819845 |
T |
|
| Q |
118 |
aaaggtgtctttgccaagctttggaaaagtccggcaccttccaaggttgtagcgttctcttggaagcttctttacgatcgtatcccaacaagggttaatc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47819846 |
aaaggtgtctttgccaagctttggaaaagtccggcaccttccaaggttgtagcgttctcttggaagcttctttacgatcgtatcccaacaagggttaatc |
47819945 |
T |
|
| Q |
218 |
tattggttaggaatgtcttgcccacggatgcttcacatttgtgaaccttgtgcgggagaggggaggaatcgtcaattcatctttttcttcattgcgaagt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
47819946 |
tattggttaggaatgtcttgcccacggatgcttcacatttgtgtaccttgtgcgggagaggggaggaatcgtcaattcatccttttcttcattgcgaagt |
47820045 |
T |
|
| Q |
318 |
tgccggaagggtgtggcgtgacatgatggggtggtgggagagttttattgtaatcccgccaaatttatttgtcttatgggagtgttggtgcggtggggag |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
47820046 |
tgccggaagggtgtggcgtgacatgatggggtggtgggagagttttattgtaatcccgccaaatttatttatcttatgggagtgttggtgcggtggggag |
47820145 |
T |
|
| Q |
418 |
aggaagaagagtattcgtcgggggttaagattaatttggcatgcgacgatttgggttttatggaaagctaggaatgacaagatcttcaataatcggaatc |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47820146 |
aggaagaagagtattcgtcgggggttaagattaatttggcatgcgacgatttgggttttatggaaagctaggaatgacaagatcttcaataatcggaat- |
47820244 |
T |
|
| Q |
518 |
cggaggtggtggatattgtggaggatattaaggtggttacttggtggtggtcgttggagataatggcaatgtctccgtgtatgttctatgagtggtgtta |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47820245 |
--ttggtggtggatattgtggaggatattaaggtggttacttggtggtggtcgttggagataatggcaatgtctccgtgtatgttctatgagtggtgttg |
47820342 |
T |
|
| Q |
618 |
gaatccgagggactgtctctcgcggttgtgctaatttgatgatgt |
662 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47820343 |
gaatccaagggactgtctctcgcggttgtgctaatttgaggatgt |
47820387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 139 - 389
Target Start/End: Original strand, 28571413 - 28571663
Alignment:
| Q |
139 |
tggaaaagtccggcaccttccaaggttgtagcgttctcttggaagcttctttacgatcgtatcccaacaagggttaatctattggttaggaatgtcttgc |
238 |
Q |
| |
|
|||||||||||||||||||| | ||| || || ||||| |||||||| ||||| ||| | || ||||||| ||||||||| ||||||||||||||| | |
|
|
| T |
28571413 |
tggaaaagtccggcaccttcgagggtggtggctttctcatggaagctcctttatgatagaattccaacaaaggttaatctcgcggttaggaatgtcttac |
28571512 |
T |
|
| Q |
239 |
ccacggatgcttcacatttgtgaaccttgtgcgggagaggggaggaatcgtcaattcatctttttcttcattgcgaagttgccggaagggtgtggcgtga |
338 |
Q |
| |
|
||| ||| ||||| | |||||| | || || | || | ||| ||||| |||| ||| ||||| |||||||| || || || || |||||||||| | |
|
|
| T |
28571513 |
ccatggaggcttctcggttgtgagctttatgtgaaagggtggatgaatcctcaactcaccttttccttcattgtgatgtagcaggtagggtgtggcaagg |
28571612 |
T |
|
| Q |
339 |
catgatggggtggtgggagagttttattgtaatcccgccaaatttatttgt |
389 |
Q |
| |
|
|| ||| ||||||||||||| || | |||| ||||| ||||||||||| |
|
|
| T |
28571613 |
tattatgcggtggtgggagaggattctcttaattccgcctaatttatttgt |
28571663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 235; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 273 - 651
Target Start/End: Original strand, 37035347 - 37035725
Alignment:
| Q |
273 |
gagaggggaggaatcgtcaattcatctttttcttcattgcgaagttgccggaagggtgtggcgtgacatgatggggtggtgggagagttttattgtaatc |
372 |
Q |
| |
|
||||| ||| |||||||||| |||||||||||| ||||| || ||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| |
|
|
| T |
37035347 |
gagagtggatgaatcgtcaactcatctttttctccattgtgaggttgccggaagggtgtggcgtgatattatggggtggtgggagaggtttattgtaatt |
37035446 |
T |
|
| Q |
373 |
ccgccaaatttatttgtcttatgggagtgttggtgcggtggggagaggaagaagagtattcgtcgggggttaagattaatttggcatgcgacgatttggg |
472 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | || |||||||||| ||| ||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
37035447 |
ccgcctaatttatttgtcttatgggagtgttggagtggcggggagaggattaagcgtattcgtcaggggttaagattaatttggcatgttacgatttggg |
37035546 |
T |
|
| Q |
473 |
ttttatggaaagctaggaatgacaagatcttcaataatcggaatccggaggtggtggatattgtggaggatattaaggtggttacttggtggtggtcgtt |
572 |
Q |
| |
|
|||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
37035547 |
ttttatggaaagctagaaatgacaagatttttaataatcggaatccggaggtggtggatattgtggaggatattaaggtattgacttggcggtggtcgtt |
37035646 |
T |
|
| Q |
573 |
ggagataatggcaatgtctccgtgtatgttctatgagtggtgttagaatccgagggactgtctctcgcggttgtgctaa |
651 |
Q |
| |
|
||||||||| |||||| |||| |||||||||||||||||||||| | |||||||||| || || ||||| ||||||||| |
|
|
| T |
37035647 |
ggagataattgcaatgcctccttgtatgttctatgagtggtgttgggatccgagggaatgcctttcgcgattgtgctaa |
37035725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 1611239 - 1611288
Alignment:
| Q |
137 |
tttggaaaagtccggcaccttccaaggttgtagcgttctcttggaagctt |
186 |
Q |
| |
|
||||||||||||||||||| ||||| || || || ||||||||||||||| |
|
|
| T |
1611239 |
tttggaaaagtccggcaccgtccaaagtggtggccttctcttggaagctt |
1611288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 93 - 629
Target Start/End: Complemental strand, 12825878 - 12825341
Alignment:
| Q |
93 |
ggaagatttgtggagtgtggaggagaaaggtgtctttgccaagctttggaaaagtccggcaccttccaaggttgtagcgttctcttggaagcttctttac |
192 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| | ||||||| | ||||| || ||| ||||||| |||||||||||||| ||||||||||| || || |
|
|
| T |
12825878 |
ggaagatttgtggagtacggaggagaagagtgtttctgccaagttatggaagagcccgacaccttcgaaggttgtagcgttttcttggaagctcctatat |
12825779 |
T |
|
| Q |
193 |
gatcgtatcccaacaagggttaatctattggttaggaatgtcttgcccacggatgcttcacatttgtgaaccttgtgcgggagaggggaggaatcgtcaa |
292 |
Q |
| |
|
||||| || | |||||||| ||||| | | | | |||||| || || ||||||||| | || | || ||||| || | || | ||| |||||||||| |
|
|
| T |
12825778 |
gatcgaatatctacaagggtgaatctttcgatgatgaatgtattaccaacggatgctcctcagtgttgtaccttttgtgagacggtggatgaatcgtcaa |
12825679 |
T |
|
| Q |
293 |
ttcatctttttcttcattgcgaagttgccggaagggtgtggc---gtgacatgatggggtggtgggaga-gttttattgtaatcccgccaaatttatttg |
388 |
Q |
| |
|
||||||| ||||||||||| || ||||||| |||||| |||| ||| ||| |||||| ||||| | |||| ||| |||| ||||| |||||||| | |
|
|
| T |
12825678 |
ttcatctatttcttcattgtgaggttgccgtaagggtttggcaaggtgtaatg--ggggtgatgggataagtttcatt-taattccgcctaatttattcg |
12825582 |
T |
|
| Q |
389 |
tcttatgggagtgttggtgcggtggggagaggaagaagagtattcgtcgggggttaagattaatttggcatgcgacgatttgggttttatggaaagctag |
488 |
Q |
| |
|
| | |||||||||||||| ||||| |||||||| ||| | || ||| || |||||| | ||| ||||| | |||| || |||||| |||||||| || |
|
|
| T |
12825581 |
ttctttgggagtgttggtgtggtggagagaggaataagcgaatccgtaatggtttaagacttattcggcattctacgagtttggttttgtggaaagcaag |
12825482 |
T |
|
| Q |
489 |
gaatgacaagatcttcaataatcggaatccggaggtggtggatattgtggaggatattaaggtggttacttggtggtggtcgttggagataatggcaatg |
588 |
Q |
| |
|
|||||| ||||| || ||||||||||| | | ||||| || || ||||| ||| | |||||| | |||||| ||||||||||||| | ||| | ||| |
|
|
| T |
12825481 |
gaatgataagatttttaataatcggaactcagcggtggatgaaatggtggatgatgtaaaggtgttgacttggcggtggtcgttggatagaatttctatg |
12825382 |
T |
|
| Q |
589 |
tctccgtgtatgttctatgagtggtgttagaatccgaggga |
629 |
Q |
| |
|
|||| ||||||| ||||| ||||||| |||||||||||| |
|
|
| T |
12825381 |
cctccttgtatgtattatgaatggtgttggaatccgaggga |
12825341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 289 - 492
Target Start/End: Complemental strand, 42749073 - 42748870
Alignment:
| Q |
289 |
tcaattcatctttttcttcattgcgaagttgccggaagggtgtggcgtgacatgatggggtggtgggagagttttattgtaatcccgccaaatttatttg |
388 |
Q |
| |
|
||||||||||||||||||||||| || |||||||| || ||||||| | | ||||||||||||||||| | || |||| || || || || || |
|
|
| T |
42749073 |
tcaattcatctttttcttcattgtgaggttgccggtagagtgtggcagggtgttatggggtggtgggagaggatgatgttaattccccctaacttcttca |
42748974 |
T |
|
| Q |
389 |
tcttatgggagtgttggtgcggtggggagaggaagaagagtattcgtcgggggttaagattaatttggcatgcgacgatttgggttttatggaaagctag |
488 |
Q |
| |
|
| | |||||||||||| |||| ||||||||||| ||||| | |||| | || ||||| | ||||||||| | ||||||||||| |||||||||||||| |
|
|
| T |
42748973 |
ttctttgggagtgttggagcggaggggagaggaataagagaactcgtagcggattaaggcttatttggcataccacgatttgggtgttatggaaagctag |
42748874 |
T |
|
| Q |
489 |
gaat |
492 |
Q |
| |
|
|||| |
|
|
| T |
42748873 |
gaat |
42748870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 186
Target Start/End: Complemental strand, 42749266 - 42749176
Alignment:
| Q |
94 |
gaagatttgtggagtgtggaggagaaaggtgtctttgccaagctttggaaaagtccggcaccttccaaggttgtagcgttctcttggaagctt |
186 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| || || | ||||| |||| ||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
42749266 |
gaagatttgtggagtatggaggaaaaaggtgt--ttagaaaattgtggaagagtctggcaccttcgaaggttgttgcgttctcttggaagctt |
42749176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 394 - 492
Target Start/End: Complemental strand, 34774782 - 34774684
Alignment:
| Q |
394 |
tgggagtgttggtgcggtggggagaggaagaagagtattcgtcgggggttaagattaatttggcatgcgacgatttgggttttatggaaagctaggaat |
492 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||| | |||| || ||||| | ||||||||| | ||||||||||| |||||||||||||||||| |
|
|
| T |
34774782 |
tgggagtgttggtgcggaggggagaggaataagagaactcgtaacggattaaggcttatttggcatactacgatttgggtgttatggaaagctaggaat |
34774684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 94 - 186
Target Start/End: Complemental strand, 34775082 - 34774990
Alignment:
| Q |
94 |
gaagatttgtggagtgtggaggagaaaggtgtctttgccaagctttggaaaagtccggcaccttccaaggttgtagcgttctcttggaagctt |
186 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| ||| ||| | ||||| |||||||||||||| | |||||| ||||| |||||||||||| |
|
|
| T |
34775082 |
gaagatttgtggagtatggaggaaaaaggtgtttttagcaaattgtggaagagtccggcaccttcgatggttgttgcgttttcttggaagctt |
34774990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 15858141 - 15858193
Alignment:
| Q |
137 |
tttggaaaagtccggcaccttccaaggttgtagcgttctcttggaagcttctt |
189 |
Q |
| |
|
||||||||||||||||||| || || ||||| || |||||||||||||||||| |
|
|
| T |
15858141 |
tttggaaaagtccggcaccgtctaaagttgtggcattctcttggaagcttctt |
15858193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 1033871 - 1033915
Alignment:
| Q |
136 |
ctttggaaaagtccggcaccttccaaggttgtagcgttctcttgg |
180 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
1033871 |
ctttggaagagtccggctccttccaaagttgtggcgttctcttgg |
1033915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 10500650 - 10500694
Alignment:
| Q |
139 |
tggaaaagtccggcaccttccaaggttgtagcgttctcttggaag |
183 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||| |||||||||||| |
|
|
| T |
10500650 |
tggaaaagcccggctccttccaaggtagtagccttctcttggaag |
10500694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 15316223 - 15316271
Alignment:
| Q |
133 |
aagctttggaaaagtccggcaccttccaaggttgtagcgttctcttgga |
181 |
Q |
| |
|
|||||||||||||||||||| || || |||||||| || |||||||||| |
|
|
| T |
15316223 |
aagctttggaaaagtccggctccgtctaaggttgtggctttctcttgga |
15316271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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