View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_high_66 (Length: 310)
Name: NF19615_high_66
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_high_66 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 41 - 292
Target Start/End: Complemental strand, 37495247 - 37494996
Alignment:
| Q |
41 |
attaaggtaattaattaattaatcgttacattgacctcaaaaagaaaatactaagctcctggtgcatattatgatctccctcaggatcaatcaaatgaaa |
140 |
Q |
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| T |
37495247 |
attaaggtaattaattaattaatcgttacattgacctcaaaaagaaaatactaagctcctggtgaatattatgatctccctcaggatcaatcaaatgaaa |
37495148 |
T |
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| Q |
141 |
agattcacattcagaagatccaccaccaaccctcttaaaactacctctcaaatacataacttcattatcttcttctttattcacaatttccttacacttc |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37495147 |
agattcacattcagaagatccaccaccaaccctcttaaaactacctctcaaatacataacttcattatcttcttctttattcacaatttccttacacttc |
37495048 |
T |
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| Q |
241 |
attactccagttccaacagcaacagaacgcatcaaactcaacacttcaatat |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37495047 |
attactccagttccaacagcaacagaacgcatcaaactcaacacttcaatat |
37494996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 149
Target Start/End: Complemental strand, 39308133 - 39308105
Alignment:
| Q |
121 |
tcaggatcaatcaaatgaaaagattcaca |
149 |
Q |
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| T |
39308133 |
tcaggatcaatcaaatgaaaagattcaca |
39308105 |
T |
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