View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19615_high_67 (Length: 301)

Name: NF19615_high_67
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19615_high_67
NF19615_high_67
[»] chr5 (6 HSPs)
chr5 (1-288)||(40181169-40181456)
chr5 (2-266)||(38605675-38605936)
chr5 (107-195)||(40180547-40180635)
chr5 (50-186)||(41885856-41885992)
chr5 (127-258)||(38604989-38605120)
chr5 (208-250)||(41885995-41886037)
[»] chr8 (5 HSPs)
chr8 (75-263)||(44459540-44459725)
chr8 (75-263)||(44467073-44467258)
chr8 (106-266)||(44460273-44460430)
chr8 (106-266)||(44467806-44467963)
chr8 (127-266)||(34502246-34502382)
[»] chr1 (1 HSPs)
chr1 (106-266)||(46359143-46359300)
[»] chr6 (1 HSPs)
chr6 (118-266)||(410919-411068)


Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 40181456 - 40181169
Alignment:
Q  1 ttttttctgtgggacatgcttaagaaaattggccgctatgaaactgactttcttaacgcaaggattctaaataaactcatagaatccttctctgttatgg 100  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||    
T  40181456 ttttttctgtgggacatgcttaagtatattggccgctatgaaactgactttcttaatgcaaggattctcaataaactcatagaatccttctcagttatgg 40181357  T
Q  101 ggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctctttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40181356 ggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacatattactatacactgcaagctctttt 40181257  T
Q  201 gaggagcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgctgctactccatgatgatgatcaagaa 288  Q
    ||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||    
T  40181256 gaggagcacaaggtgtagtgctgatatgatccaccaagcagagtctatctatcaaaagttgctgctactccatgatgatgatcaagaa 40181169  T

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Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 2 - 266
Target Start/End: Complemental strand, 38605936 - 38605675
Alignment:
Q  2 tttttctgtgggacatgcttaagaaaattggccgctatgaaactgactttcttaacgcaaggattctaaataaactcatagaatccttctctgttatggg 101  Q
    |||||||||||||  |||||||||| |||||||  ||| |||| | | |||||||| ||   ||||| ||| | |||||| ||| ||||||  |||| ||    
T  38605936 tttttctgtgggatttgcttaagaatattggccattatcaaaccggccttcttaacccacccattctcaatcacctcatacaattcttctcaattatagg 38605837  T
Q  102 gcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttg 201  Q
     |   |||| ||| | |||||||| ||||||||||  ||||| || ||||||||||||||||||||||| || ||||||| |||||| |||||||||||     
T  38605836 tcgagaaggcaagtctgcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatattactttacacttcaagctctttt- 38605738  T
Q  202 aggagcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgctgct 266  Q
      || ||||| ||||||||||||||| ||||||||| |  ||||||||| |||||| ||||||||    
T  38605737 --gaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtcaaaacttgctgct 38605675  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 40180635 - 40180547
Alignment:
Q  107 aaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagct 195  Q
    |||| ||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||||| |||  || |||||||||||||    
T  40180635 aagggaaggctgcacttgatgtttttcataaatttgaggtctttcaatgtgtgccaaatcaagatacatatatctttacactgcaagct 40180547  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 186
Target Start/End: Original strand, 41885856 - 41885992
Alignment:
Q  50 ttcttaacgcaaggattctaaataaactcatagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatt 149  Q
    ||||||||||  |||||||||||||||| ||||||| ||||||  |||||||||   |||| || || ||||  |||||||||||||| ||||| |  ||    
T  41885856 ttcttaacgctcggattctaaataaactaatagaattcttctcaattatggggcgagaagggaaagctgcacacgatgtttttcataaatttgaggcttt 41885955  T
Q  150 tcaatgtgtgccaaatcaagatacttattactataca 186  Q
    |||||||| ||||||||||||||| ||||||| ||||    
T  41885956 tcaatgtgagccaaatcaagatacatattactttaca 41885992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 127 - 258
Target Start/End: Complemental strand, 38605120 - 38604989
Alignment:
Q  127 gtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgata 226  Q
    ||||||||||| ||||| || ||||| |||||||| ||||||||| | |||  || ||||||| |||||||||| | ||  ||||| || ||||||||||    
T  38605120 gtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatctttacactggaagctctttttaagacaacaagttgcagtgctgata 38605021  T
Q  227 tgatccaccaaacagcttctatctatcaaaag 258  Q
    || |||| ||| | |||||||||| |||||||    
T  38605020 tgctccagcaagccgcttctatctgtcaaaag 38604989  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 250
Target Start/End: Original strand, 41885995 - 41886037
Alignment:
Q  208 acaaggtgtagtgctgatatgatccaccaaacagcttctatct 250  Q
    |||||| |||||| |||||||||||||||||| ||||||||||    
T  41885995 acaaggagtagtgatgatatgatccaccaaactgcttctatct 41886037  T

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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 75 - 263
Target Start/End: Original strand, 44459540 - 44459725
Alignment:
Q  75 actcatagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatact 174  Q
    ||||||| ||||||||||  |||||||||   |||| ||  | |||||||| ||||||||||  ||||| |  ||||| |||||||||||||| |||||     
T  44459540 actcatacaatccttctcaattatggggcgagaaggtaaatctgcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgataca 44459639  T
Q  175 tattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgct 263  Q
    ||||||| ||| ||||||||||||||   || ||| |  |||||| || |||||||||| ||| |||||||||||| ||| ||| ||||    
T  44459640 tattactttactctgcaagctctttt---gaccacgacctgtagtactcatatgatccatcaagcagcttctatctgtcagaagatgct 44459725  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 75 - 263
Target Start/End: Original strand, 44467073 - 44467258
Alignment:
Q  75 actcatagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatact 174  Q
    ||||||| ||||||||||  |||||||||   |||| ||  | |||||||| ||||||||||  ||||| |  ||||| |||||||||||||| |||||     
T  44467073 actcatacaatccttctcaattatggggcgagaaggtaaatctgcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgataca 44467172  T
Q  175 tattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgct 263  Q
    ||||||| ||| ||||||||||||||   || ||| |  |||||| || |||||||||| ||| |||||||||||| ||| ||| ||||    
T  44467173 tattactttactctgcaagctctttt---gaccacgacctgtagtactcatatgatccatcaagcagcttctatctgtcagaagatgct 44467258  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 266
Target Start/End: Original strand, 44460273 - 44460430
Alignment:
Q  106 caaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgagga 205  Q
    ||||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||| |||  | |||| ||||||||| ||||||       
T  44460273 caaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctgcaagcttttttgac-- 44460370  T
Q  206 gcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgctgct 266  Q
     ||||| |||||   ||||||||||||||||| | |||||||| | ||||||| |||||||    
T  44460371 -cacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgct 44460430  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 266
Target Start/End: Original strand, 44467806 - 44467963
Alignment:
Q  106 caaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgagga 205  Q
    ||||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||| |||  | |||| ||||||||| ||||||       
T  44467806 caaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctgcaagcttttttgac-- 44467903  T
Q  206 gcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgctgct 266  Q
     ||||| |||||   ||||||||||||||||| | |||||||| | ||||||| |||||||    
T  44467904 -cacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgct 44467963  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 127 - 266
Target Start/End: Complemental strand, 34502382 - 34502246
Alignment:
Q  127 gtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgata 226  Q
    ||||||||||| ||||| | ||||||||||||||| |||| |||||| ||   || ||||||| ||||||||||   || |||||| ||||   ||||||    
T  34502382 gtttttcataaatttgaggcatttcaatgtgtgccgaatcgagatacatacacctttacactgaaagctctttt---gatcacaagatgtatcactgata 34502286  T
Q  227 tgatccaccaaacagcttctatctatcaaaagttgctgct 266  Q
    ||| ||||||| | |||||||||| ||||||| |||||||    
T  34502285 tgacccaccaagccgcttctatctgtcaaaagatgctgct 34502246  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 266
Target Start/End: Original strand, 46359143 - 46359300
Alignment:
Q  106 caaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgagga 205  Q
    ||||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||| |||  | |||| ||||||||| ||||||       
T  46359143 caaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctgcaagcttttttgac-- 46359240  T
Q  206 gcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgctgct 266  Q
     ||||| |||||   ||||||||||||||||| | |||||||| | ||||||| |||||||    
T  46359241 -cacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgct 46359300  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 118 - 266
Target Start/End: Original strand, 410919 - 411068
Alignment:
Q  118 gcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgta 217  Q
    |||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| ||   || |||| || |||||||||| || |  ||||| || |    
T  410919 gcacttgaagtttttcataaatttgaggtatttcaatgtgttccaaatcaagatacatacatctttacattggaagctctttttagaacaacaagttgca 411018  T
Q  218 gtgc-tgatatgatccaccaaacagcttctatctatcaaaagttgctgct 266  Q
    || | | ||||| |||| ||| | |||||||||| ||||||| |||||||    
T  411019 gtactttatatgctccagcaagcggcttctatctgtcaaaagatgctgct 411068  T

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