View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19615_high_71 (Length: 298)

Name: NF19615_high_71
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19615_high_71
NF19615_high_71
[»] chr3 (1 HSPs)
chr3 (9-298)||(45708866-45709161)


Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 298
Target Start/End: Original strand, 45708866 - 45709161
Alignment:
Q  9 atcatcatttcccacccattgatagtcatactgcaaaaccaattaaataaattcagtacattagtcaccaaacttgtaaattaaactt-----nnnnnnn 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                
T  45708866 atcatcatttcccacccattgatagtcatactgcaaaaccaattaaataaattcagtacattagtcaccaaacttgtaaattaaacttaaaaaaaaaaaa 45708965  T
Q  104 nncaaagagtactccatccttaaatataagagcacattgattaaattttattgttgatgtaattaaaataactaggagtactctttc-nnnnnnnnntat 202  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||    
T  45708966 aacaaagagtactccatccttaaatataagagcacattgattaaattttattgttgatgtaattaaaataactaggagtactctttcaaaaaaaagatat 45709065  T
Q  203 taataactaggagtagtattttaataaagaaataactgattaaatttnnnnnnnnnnttataggaagaggaggcacagaatacttaccatacagac 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||    
T  45709066 taataactaggagtagtattttaataaagaaataactgattaaatttaaaagaaattttataggaagaggaggcacagaatacttaccatacagac 45709161  T

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