View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_high_84 (Length: 250)
Name: NF19615_high_84
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_high_84 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 6381495 - 6381255
Alignment:
| Q |
10 |
attatactccagcttaggttttgtatttcattcattagatacaatcctgtggatattttccatcaaagataaaagggtttatgcattaatatgcttcaaa |
109 |
Q |
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| T |
6381495 |
attagactccagcttaggttttgtatttcattcattagatacaatcctgtggatattttccatcaaagataaaagggtttatgcattaatatgcttcaaa |
6381396 |
T |
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| Q |
110 |
ttcctcaaacatgaagattttgatggaagcggctgcatttgatgattgaaagatccccaatatgatggcctacaaaagataacattcttcattgaaggtt |
209 |
Q |
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| T |
6381395 |
ttcctcaaacatgaagattttgatggaagcggctgcatttgatgattgaaagatccccaatatgatggcctacaaaagataacattcttcattgaaggtt |
6381296 |
T |
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| Q |
210 |
ccaaaatataaattgagattggctccattaagtatatcaga |
250 |
Q |
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| T |
6381295 |
ccaaaatataaattgagattggctccattaagtatatcaga |
6381255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 15 - 244
Target Start/End: Complemental strand, 37642820 - 37642597
Alignment:
| Q |
15 |
actccagcttaggttttgtatttcattcattagatacaatcctgtggatattttccatcaaagataaaagggtttatgcattaatatgcttcaaattcct |
114 |
Q |
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| T |
37642820 |
actccagcttagattttgtattgcat------gatacaaccccgtgaatattttccatcaaagataaaagggtgtctgcagtaatatgtttcaaattctt |
37642727 |
T |
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| Q |
115 |
caaacatgaagattttgatggaagcggctgcatttgatgattgaaagatccccaatatgatggcctacaaaagataacattcttcattgaaggttccaaa |
214 |
Q |
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| T |
37642726 |
caaaattgaagattttgatgcaattagctgcatttgatgattgaatgatccccagtatgatggcctacaaaagataacattcttcattgaaggttccaaa |
37642627 |
T |
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| Q |
215 |
atataaattgagattggctccattaagtat |
244 |
Q |
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| T |
37642626 |
atctaaattaagattggctcaattaagtat |
37642597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 47 - 202
Target Start/End: Complemental strand, 19826187 - 19826032
Alignment:
| Q |
47 |
gatacaatcctgtggatattttccatcaaagataaaagggtttatgcattaatatgcttcaaattcctcaaacatgaagattttgatggaagcggctgca |
146 |
Q |
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||||||| || |||||||||||||||| |||||||||||| | |||||||||||| |||||||| ||||| |||||||||||||| || |||||| |
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| T |
19826187 |
gatacaaccccgtggatattttccatcgcagataaaagggtgtctgcattaatatgtgtcaaattcttcaaaattgaagattttgatgcaattagctgca |
19826088 |
T |
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| Q |
147 |
tttgatgattgaaagatccccaatatgatggcctacaaaagataacattcttcatt |
202 |
Q |
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| T |
19826087 |
tttgatgtttgaatgatctccagtatgatggcctacaaaagataacattcttcatt |
19826032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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