View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_low_1 (Length: 1075)
Name: NF19615_low_1
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 518; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 20 - 557
Target Start/End: Original strand, 39270498 - 39271035
Alignment:
| Q |
20 |
ggttgcacatcaacaactaattcttcttattctccaaatattatggaagaattagaagaagaacaagtgtactcccaagagattagtaattcaagggaaa |
119 |
Q |
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| T |
39270498 |
ggttgcacatcaacaactaattcttcttattctccaaatattatggaagaattagaagaagaacaagtgtactcccaagagattagtaattcaagggaaa |
39270597 |
T |
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| Q |
120 |
ggagggtgtcaataacacaatacaagttcttgtgttataacaggtccaacatagcaagaagtagtagttcatgtggatggacaagtcctatggtagagtg |
219 |
Q |
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| T |
39270598 |
ggagggtgtcaataacacaatacaagttcttgtgttataacaggtccaacatagcaagaagtagtagttcatgtggatggacaagtcctatggtagagtg |
39270697 |
T |
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| Q |
220 |
ttgtgtttgtttgtctggttttgaagcaaatcaagaggtgagtgagttgccttgcaagcatttcttccacagaggttgcttagataaatggtttgataac |
319 |
Q |
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| T |
39270698 |
ttgtgtttgtttgtctggttttgaagcaaatcaagaggtgagtgagttgccttgcaagcatttcttccacagaggttgcttagataaatggtttgataac |
39270797 |
T |
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| Q |
320 |
aaacatagttcatgtcctttatgtcgttctatggactaatgtctagttgttagtttgaggctaattagagttaattgttattaatttgttgtagtgttga |
419 |
Q |
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| T |
39270798 |
aaacatagttcatgtcctttatgtcgttctatggactaatgtctagttgttagtttgaggctaattagagttaattgttattaatttgttgtagtgttga |
39270897 |
T |
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| Q |
420 |
agaaattataaatgcttgttattatttgttagttctgtgaattaatcctctctaattctgtatgtttactctttaactaagcgatattggagataatgct |
519 |
Q |
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| T |
39270898 |
agaaattataaatgcttgttattatttgttagttctgtgaatctatcctctctaattctgtatgtttactctttaactaagcgatattggtgataatgct |
39270997 |
T |
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| Q |
520 |
gccttttgcttgatttgtatgttcaatcgtaaatgagt |
557 |
Q |
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| T |
39270998 |
gccttttgcttgatttgtatgtgcaatcgtgaatgagt |
39271035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 624 - 1075
Target Start/End: Original strand, 39271124 - 39271578
Alignment:
| Q |
624 |
ctttgctataaggaattttaccaagatttttccttaaaaataactatgaaatatgaattttgcnnnnnnnnnnncttctacccaagcggttcgtaacttc |
723 |
Q |
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| T |
39271124 |
ctttgctataaggaattttaccaagttttttccttaaaaataactatgaaatatgaattttgctttttt------ttctacccaagcggttcgtaacttc |
39271217 |
T |
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| Q |
724 |
caaacttttgacc-----caattccccgatccatttaattaaattaagttttactaaaataagttcaaaattgattgaaactgttagcgaggtagtttct |
818 |
Q |
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| T |
39271218 |
caaacttttgatccaattcaattccccgatccatttaattaaattaagttttactaaaataagctcaaaattgattgaaactcttattgaggtagtttct |
39271317 |
T |
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| Q |
819 |
ttttccaccactatactc--tttgaaaaacctaccaattttacttcttagacgaaattactcatttttggaagtatacttc--ctctcaagtgactattg |
914 |
Q |
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| T |
39271318 |
ttttccaccactatactctttttgtaaaacctatctattttacttcttagacgaaattactcatttttggaagtatacttcctctctcaagtgactattg |
39271417 |
T |
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| Q |
915 |
ctgagacaagcttagttcatggtttttgatatcgacagaactcttatacgaacaagagtattttaaatcaagacttggtaaaacgctcttaccatgcacc |
1014 |
Q |
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| T |
39271418 |
ctaagacaagcttagttcatggtttttgatatcgacagaactcttatatgaacaagagcatttcaaatcaagacttggtaaaacgctcttaccatgcacc |
39271517 |
T |
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| Q |
1015 |
ttatctttactattccttagagtatgttatgtttggatgaatgaatattttgagataatgt |
1075 |
Q |
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| T |
39271518 |
ttatctttactattccttagagtatgttatgtttggatgaatgaatattttgagataatgt |
39271578 |
T |
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