View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19615_low_102 (Length: 208)

Name: NF19615_low_102
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19615_low_102
NF19615_low_102
[»] chr8 (10 HSPs)
chr8 (1-208)||(25603687-25603894)
chr8 (134-208)||(24913808-24913881)
chr8 (140-208)||(25489420-25489487)
chr8 (109-184)||(25321864-25321938)
chr8 (134-208)||(25646236-25646309)
chr8 (1-47)||(25694445-25694491)
chr8 (170-208)||(25799545-25799583)
chr8 (168-208)||(25569168-25569208)
chr8 (97-138)||(24913900-24913941)
chr8 (97-138)||(25646176-25646217)
[»] scaffold0070 (1 HSPs)
scaffold0070 (170-199)||(17858-17887)


Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 25603687 - 25603894
Alignment:
Q  1 gaaatatcgtcttcgtttttgtctaagtcgtcccttaggcttgttaaagtacaaaacaaaatttgatcatatacaagtctccaaattcatgaaaagcatg 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25603687 gaaatatcatcttcgtttttgtctaagtcgtcccttaggcttgttaaagtacaaaacaaaatttgatcatatacaagtctccaaattcatgaaaagcatg 25603786  T
Q  101 tccaaaaatatttttatgcacaattatgtagcaacctactatgacaaaaaaggcagaaatattcaaccaaaaaactgattagaaagttcagtaatagaag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25603787 tccaaaaatatttttatgcacaattatgtagcaacctactatgacaaaaaaggcagaaatattcaaccaaaaaactgattagaaagttcagtaatataag 25603886  T
Q  201 atcttttc 208  Q
    ||||||||    
T  25603887 atcttttc 25603894  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 134 - 208
Target Start/End: Complemental strand, 24913881 - 24913808
Alignment:
Q  134 acctactatgacaaaaaaggcagaaatattcaaccaaaaaactgattagaaagttcagtaatagaagatcttttc 208  Q
    |||| |||| ||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24913881 acctgctataacataaaagacagaaatattcaaccaaaaa-ctgattagaaagttcagtaatagaagatcttttc 24913808  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 25489420 - 25489487
Alignment:
Q  140 tatgacaaaaaaggcagaaatattcaaccaaaaaactgattagaaagttcagtaatagaagatcttttc 208  Q
    ||||||| ||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  25489420 tatgacataaaagacagaaatattcaatcaaaa-actgattagaaagttcagtaatagaagatcttttc 25489487  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 25321864 - 25321938
Alignment:
Q  109 tatttttatgcacaattatgtagcaacctactatgacaaaaaaggcagaaatattcaaccaaaaaactgattagaa 184  Q
    ||||||| |||| |||||||||||||||| |||||||| |||||||||| |||||||||| |||||||||||||||    
T  25321864 tatttttctgcaaaattatgtagcaacctgctatgacataaaaggcagatatattcaacc-aaaaactgattagaa 25321938  T

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Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 208
Target Start/End: Original strand, 25646236 - 25646309
Alignment:
Q  134 acctactatgacaaaaaaggcagaaatattcaaccaaaaaactgattagaaagttcagtaatagaagatcttttc 208  Q
    |||| |||| ||| ||||| |||||||||||||| |||| ||||||||||| |||||||||||||||||||||||    
T  25646236 acctgctataacataaaagacagaaatattcaactaaaa-actgattagaaggttcagtaatagaagatcttttc 25646309  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 25694445 - 25694491
Alignment:
Q  1 gaaatatcgtcttcgtttttgtctaagtcgtcccttaggcttgttaa 47  Q
    |||||||| |||||||||||||| |||||||||||||||||| ||||    
T  25694445 gaaatatcatcttcgtttttgtccaagtcgtcccttaggcttcttaa 25694491  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 170 - 208
Target Start/End: Original strand, 25799545 - 25799583
Alignment:
Q  170 aaaaactgattagaaagttcagtaatagaagatcttttc 208  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  25799545 aaaaactgattacaaagttcagtaatagaagatcttttc 25799583  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 25569168 - 25569208
Alignment:
Q  168 caaaaaactgattagaaagttcagtaatagaagatcttttc 208  Q
    ||||||| ||||||| |||||||||||||||||||||||||    
T  25569168 caaaaaaatgattagcaagttcagtaatagaagatcttttc 25569208  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 24913941 - 24913900
Alignment:
Q  97 catgtccaaaaatatttttatgcacaattatgtagcaaccta 138  Q
    |||||||||  |||||||| ||||||||||||||||||||||    
T  24913941 catgtccaactatatttttctgcacaattatgtagcaaccta 24913900  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 138
Target Start/End: Original strand, 25646176 - 25646217
Alignment:
Q  97 catgtccaaaaatatttttatgcacaattatgtagcaaccta 138  Q
    |||||||||  |||||||| ||||||||||||||||||||||    
T  25646176 catgtccaactatatttttctgcacaattatgtagcaaccta 25646217  T

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Target: scaffold0070 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 170 - 199
Target Start/End: Complemental strand, 17887 - 17858
Alignment:
Q  170 aaaaactgattagaaagttcagtaatagaa 199  Q
    ||||||||||||||||||||||||||||||    
T  17887 aaaaactgattagaaagttcagtaatagaa 17858  T

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