View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19615_low_12 (Length: 544)
Name: NF19615_low_12
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 260 - 526
Target Start/End: Complemental strand, 51855556 - 51855290
Alignment:
| Q |
260 |
gtactaattgtttgctctgcttctggatagcagattgaagaagcaaagctttttcgtgctcaaggtcaaaatgagatggctatcaaccttggaatgtaca |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51855556 |
gtactaattgtttgctctgcttctggatagcagattgaagaagcaaagctttttcgtgctcaaggtcaaaatgagatggctatcaaccttggaatgtaca |
51855457 |
T |
|
| Q |
360 |
tatcacaaaattatcaaagtaatgaagaggtttcagatgtatatcgcttgattgggaagtggctggcagagaccagatctagcaagttattggacagagt |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | | |
|
|
| T |
51855456 |
tatcacaaaattatcaaagtaatgaagaggtttcagatgtatatcgcttgattgggaagtggctggcagagatcagatctagcaagttattggacaaact |
51855357 |
T |
|
| Q |
460 |
taattctgtttaatgtttcaataatggatgctcccttgtgatgcctgactcatttgagttcatgtct |
526 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51855356 |
taattctgtttaatgtttaaataatggatgctcccttgtgatgcctgactcatttgagttcatgtct |
51855290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 260 - 526
Target Start/End: Original strand, 35042925 - 35043191
Alignment:
| Q |
260 |
gtactaattgtttgctctgcttctggatagcagattgaagaagcaaagctttttcgtgctcaaggtcaaaatgagatggctatcaaccttggaatgtaca |
359 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35042925 |
gtactaattgtttgctctgcttctggatggcagattgaagaagcaaagctttttcgtgctcaaggtcaaaatgagatggctatcaaccttggaatgtaca |
35043024 |
T |
|
| Q |
360 |
tatcacaaaattatcaaagtaatgaagaggtttcagatgtatatcgcttgattgggaagtggctggcagagaccagatctagcaagttattggacagagt |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
35043025 |
tatcacaaaattatcaaagtaatgaagaggtttcggatgtatatcgcttgattgggaagtggctggcagagaccagatctagcaagttattggacaaact |
35043124 |
T |
|
| Q |
460 |
taattctgtttaatgtttcaataatggatgctcccttgtgatgcctgactcatttgagttcatgtct |
526 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35043125 |
gaattctgtttaatgtttaaataatggatgctcccttgtgatgcctgactcatttgagttcatgtct |
35043191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 11 - 264
Target Start/End: Complemental strand, 51856097 - 51855844
Alignment:
| Q |
11 |
gtgagatgaacataatgtgaggttgaccttgacgctgaggttttggacattacttgatgctgcttctagacaaaaacaggtttaattagttaatgtttga |
110 |
Q |
| |
|
|||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51856097 |
gtgagaagaacatgatgtgaggtggaccttgacgctgaggttttggacattacttgatgctgcttctagacaaaaacaggtttaattagttaatgtttga |
51855998 |
T |
|
| Q |
111 |
atttgatctagttaatgnnnnnnnnnaaatgtttgttcatgttgacttaactttacttgaatataaaatgttagaattatgttattggagaatagtcttt |
210 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
51855997 |
atttgatctagttaatgttttttttaaaatgtttgttcatgttgacttaactttacttgaatataaaatgttagaattatgttattggagaatagccttt |
51855898 |
T |
|
| Q |
211 |
ggccctaaggctggtaagggaagttcatctgccagatttgtgtatttgtgtact |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51855897 |
ggccctaaggctggtaagggaagttcatctgccagatttgtgtatttgtgtact |
51855844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 35042588 - 35042641
Alignment:
| Q |
211 |
ggccctaaggctggtaagggaagttcatctgccagatttgtgtatttgtgtact |
264 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35042588 |
ggccctaaggctggtaggagaagttcatctgccagatttgtgtatttgtgtact |
35042641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 264
Target Start/End: Complemental strand, 8945283 - 8945031
Alignment:
| Q |
11 |
gtgagatgaacataatgtgaggttgaccttgacgctgaggttttggacattacttgatgctgcttctagacaaaaacaggtttaattagttaatgtttga |
110 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8945283 |
gtgagaagaacataatgtgaggttgaccttgacgctgaggttttggacattacttgatgctgcttctagacaaaaacaggtttaattagttaatgtttga |
8945184 |
T |
|
| Q |
111 |
atttgatctagttaatgnnnnnnnnnaaatgtttgttcatgttgacttaactttacttgaatataaaatgttagaattatgttattggagaatagtcttt |
210 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8945183 |
atttgatctagttaatgttttttta-aaatgtttgttcatgttgacttaactttacttgaatataaaatgttagaattatgttattggagaatagccttt |
8945085 |
T |
|
| Q |
211 |
ggccctaaggctggtaagggaagttcatctgccagatttgtgtatttgtgtact |
264 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8945084 |
gcccctaaggctggtaagggaagttcatctgccagatttgtgtatttgtgtact |
8945031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 373 - 526
Target Start/End: Complemental strand, 8944678 - 8944525
Alignment:
| Q |
373 |
tcaaagtaatgaagaggtttcagatgtatatcgcttgattgggaagtggctggcagagaccagatctagcaagttattggacagagttaattctgtttaa |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||| |
|
|
| T |
8944678 |
tcaaagtaatgaagaggtttcagatgtatatcgcttgattgggaagtggctggcagagaccagatgtagcaagttattggacaaacttaattctgtttaa |
8944579 |
T |
|
| Q |
473 |
tgtttcaataatggatgctcccttgtgatgcctgactcatttgagttcatgtct |
526 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8944578 |
tgtttaaataatggatgctcccctgtgatgcctgactcatttgagttcatgtct |
8944525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 271 - 398
Target Start/End: Complemental strand, 1869644 - 1869515
Alignment:
| Q |
271 |
ttgctctgcttctggatagcagattgaagaagcaaagctttttcgtgctcaaggtcaaaatgagatggctatcaaccttggaatgtacatatcac--aaa |
368 |
Q |
| |
|
|||||||| ||| |||| |||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||| | ||||||||||||| || |
|
|
| T |
1869644 |
ttgctctggttccggatggcagattgaagaagcaaaacttttttgtgctcaaggtcaaaatgaaatggctatcaaccttaggatgtacatatcaccaaat |
1869545 |
T |
|
| Q |
369 |
attatcaaagtaatgaagaggtttcagatg |
398 |
Q |
| |
|
|||||||||||||||||||| |||||||| |
|
|
| T |
1869544 |
attatcaaagtaatgaagagacttcagatg |
1869515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 260 - 329
Target Start/End: Complemental strand, 8944743 - 8944674
Alignment:
| Q |
260 |
gtactaattgtttgctctgcttctggatagcagattgaagaagcaaagctttttcgtgctcaaggtcaaa |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8944743 |
gtactaattgtttgctctgcttctggatagcagattgaagaagcaaagctttttcgtgctcaaggtcaaa |
8944674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 9e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 395 - 526
Target Start/End: Original strand, 26887003 - 26887134
Alignment:
| Q |
395 |
gatgtatatcgcttgattgggaagtggctggcagagaccagatctagcaagttattggacagagttaattctgtttaatgtttcaataatggatgctccc |
494 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26887003 |
gatgtatatcgcttgattgggaagtggccggcagagaccagatctagcaagttattggacaaacttaattctgtttaatgtttaaataatggatgctccc |
26887102 |
T |
|
| Q |
495 |
ttgtgatgcctgactcatttgagttcatgtct |
526 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
26887103 |
ttgtgatgcctgactcatttgagttcatgtct |
26887134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 24269886 - 24269829
Alignment:
| Q |
35 |
gaccttgacgctgaggttttggacattacttgatgctgcttctagacaaaaacaggttt |
93 |
Q |
| |
|
|||| ||| ||||||||||||||||| ||||||| ||||||||||||| |||||||||| |
|
|
| T |
24269886 |
gaccctgatgctgaggttttggacat-acttgatactgcttctagacagaaacaggttt |
24269829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University