View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19615_low_13 (Length: 532)
Name: NF19615_low_13
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 15 - 446
Target Start/End: Original strand, 24700214 - 24700642
Alignment:
| Q |
15 |
atgaaccaaaacagatcgagacaaataaatcatgtatacatcttatgtatacagaaccgtgaacaactcatgcttacaggagataaaatttgaatcatat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24700214 |
atgaaccaaaacagatcgagacaaataaatcatgtatacatcttatgtatacagaaccgtgaacaactcatgcttacaggagataaaatttgaatcatat |
24700313 |
T |
|
| Q |
115 |
tcaaaagtgttcactatattcgtggctatttaaactgaaatcaaaacaaaatatgccatccgtatgttactctaattgccaaatcaaaactgatttcacg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24700314 |
tcaaaagtgttcactatattcgtggctatttaaactgaaatcaaaacaaagtatgccatccgtttgttactctaattgccaaatcaaaactgatttcacg |
24700413 |
T |
|
| Q |
215 |
gtgtatttaattcatgaattgttccaagaagtaatacctttatcaaattttcttttnnnnnnnnntacctttatcaaatcaattttactaaaagagaaca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||| |||| |||||||||||| |
|
|
| T |
24700414 |
gtgtatttaattcatgaattgttccaagaaataatacctttatcaaatttccttt----aaaaaatacctttatcaaatcaaatttaataaaagagaaca |
24700509 |
T |
|
| Q |
315 |
ggtaataaatttgaaatcaaaatttgattctcagaaccaaacaatattactccaaacaaaagtcaaaacaatttcagaaaactaataaccgtgaaattcc |
414 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24700510 |
ggtattaaatttgaaatcaaaatttgattctcagaaccaaacaatattactccaaacaaaagtcaaaacaatttcagaaaactaataaccgtgaaattcc |
24700609 |
T |
|
| Q |
415 |
aaaaacaatttt-ccttttgattatagtaggta |
446 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||| |
|
|
| T |
24700610 |
aaaaacaattttcccttttgattctagtaggta |
24700642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 475 - 515
Target Start/End: Original strand, 24700647 - 24700687
Alignment:
| Q |
475 |
cacatatgaatataaaatctgaatcatattcaaaagcaaaa |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24700647 |
cacatatgaatataaaatctgaatcatattcaaaagcaaaa |
24700687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University