View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_low_16 (Length: 517)
Name: NF19615_low_16
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 455; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 16 - 502
Target Start/End: Complemental strand, 6214770 - 6214284
Alignment:
| Q |
16 |
tatactatactatactactaattatgttatagtatttcctgaattaatgtgtctaatgctctttttcagtgatctgagttggacagatagtccagcaagt |
115 |
Q |
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| T |
6214770 |
tatactatactatactactaattatgttatagtatttcctgaattaatgtgtctaatggtctttttcagtgatctgagttggacagatagtccagcaagt |
6214671 |
T |
|
| Q |
116 |
attctaccaactataaatggattaatatcaagtggtataagcatttggatgtacaggtaataaagtttataatgtaatatcacatcaaagacattatcaa |
215 |
Q |
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| T |
6214670 |
attctgccaactataaatggattaatatcaagtggtataagcatttggatgtacaggtaataaagtttataatgtaatatcacatcaaagacattatcaa |
6214571 |
T |
|
| Q |
216 |
tatcactttctttatatgtaacattgcttgtttttgttattatttaataataatgcagtggagatatagatggacgtgttcccataacctcaacaaagta |
315 |
Q |
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| T |
6214570 |
tatcactttctttatgtgtaacaatgcttgtttttgttattatttaataataatgcagtggagatatagatggacgtgttcccataatctcaacaaagta |
6214471 |
T |
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| Q |
316 |
ttcaataaattccttaaaactacctgtacatacagcatggcgtccatggtacactggaaaagaggtaaagaaacattaatatatatcactattacaatat |
415 |
Q |
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| T |
6214470 |
ttcaataaattccttaaaactacatgtacgtacagcatggcgtccatggtacactggaaaagaggtaaagaaacattaatatatatcactattacaatat |
6214371 |
T |
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| Q |
416 |
atactaattaagaactttaagccacttatagataacctactacattattatatatgcaggttggaggatatgtgattggttacaaag |
502 |
Q |
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| T |
6214370 |
atactaattaagaactttaagccacttatagataacctactacattattatatatgcaggttggagggtatgtgattggttacaaag |
6214284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 39 - 385
Target Start/End: Complemental strand, 6177239 - 6176895
Alignment:
| Q |
39 |
atgttatagtatttcctgaattaatgtgtctaatgctctttttcagtgatctgagttggacagatagtccagcaagtattctaccaactataaatggatt |
138 |
Q |
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||||| || |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6177239 |
atgttgtactatttcctgaatcaatgtgtctaatggtctttttcagtgatctgagttggacagatagtccagcaagtattctaccaactataaatggatt |
6177140 |
T |
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| Q |
139 |
aatatcaagtggtataagcatttggatgtacaggta--ataaagtttataatgtaatat--cacatcaaa----gacattatcaatatcactttctttat |
230 |
Q |
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| T |
6177139 |
aatatcaagtggtataagcatatggatatacaggtatgatatactttataaattgatctgtcacatcaaaaatagatattatcaatg-------ctttat |
6177047 |
T |
|
| Q |
231 |
atgtaacattgcttgtttttgttattatttaataataatgcagtggagatatagatggacgtgttcccataacctcaacaaagtattcaataaattcctt |
330 |
Q |
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| T |
6177046 |
gtctaacattactttgttttgttatc---taataataatgcagtggagatatagatggacgtgttcctataacctcaacaaagtattcaataaattcctt |
6176950 |
T |
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| Q |
331 |
aaaactacctgtacatacagcatggcgtccatggtacactggaaaagaggtaaag |
385 |
Q |
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| T |
6176949 |
aaaactgcctgtgcatacagcatggcgtccatggtacactggaaaagaggtaaag |
6176895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 263 - 384
Target Start/End: Complemental strand, 6206827 - 6206706
Alignment:
| Q |
263 |
taataatgcagtggagatatagatggacgtgttcccataacctcaacaaagtattcaataaattccttaaaactacctgtacatacagcatggcgtccat |
362 |
Q |
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| T |
6206827 |
taataatgcagtggtgatttagatgggcgtgttcccataacctcaacaaagtattcaataaattccttaaaactgcctgtgcatacagcatggcgtccat |
6206728 |
T |
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| Q |
363 |
ggtacactggaaaagaggtaaa |
384 |
Q |
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| T |
6206727 |
ggtacactggaaaagaggtaaa |
6206706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 65 - 174
Target Start/End: Complemental strand, 6207025 - 6206916
Alignment:
| Q |
65 |
tgtctaatgctctttttcagtgatctgagttggacagatagtccagcaagtattctaccaactataaatggattaatatcaagtggtataagcatttgga |
164 |
Q |
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| T |
6207025 |
tgtctaatgctctttttcagtggtgtgggttggacagatagtccaactagtattctaccaactataaatcagttaatatcaagtggtataagcatatgga |
6206926 |
T |
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| Q |
165 |
tgtacaggta |
174 |
Q |
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| T |
6206925 |
tatacaggta |
6206916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 467 - 502
Target Start/End: Complemental strand, 6176756 - 6176721
Alignment:
| Q |
467 |
atatgcaggttggaggatatgtgattggttacaaag |
502 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
6176756 |
atatgcaggttggaggatatgtgattggttacaaag |
6176721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 502
Target Start/End: Complemental strand, 6206569 - 6206534
Alignment:
| Q |
467 |
atatgcaggttggaggatatgtgattggttacaaag |
502 |
Q |
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|||||||||||||||| ||||||||||||||||||| |
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| T |
6206569 |
atatgcaggttggagggtatgtgattggttacaaag |
6206534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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