View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_low_17 (Length: 506)
Name: NF19615_low_17
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 9 - 491
Target Start/End: Original strand, 54646501 - 54646984
Alignment:
| Q |
9 |
gaagaatatcgtaagcagctagagcttgaaatgaagaaaacagcagaaaatgataaaaagaaatgtgaatcagaaaggatattacctacaacggtccgaa |
108 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
54646501 |
gaagaaaatcgtaagcagctagagcttgaaatgaagaaaacagcagaaagtgataaaaagaaatgtgaatcggaaaggatattacctacaacgatccgaa |
54646600 |
T |
|
| Q |
109 |
ctggcaatgtcaaataagtaattattagacgaaattagctttgggagtccgtatatattctagcatgactaggaatttcaccacacaaatgtggttttgg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54646601 |
ctggcaatgtcaaataagtaattattagacgaaattagctttgggagtccgtatatattctagcatgactaggaatttcaccacacaaatgtggttttgg |
54646700 |
T |
|
| Q |
209 |
tgtttgggnnnnnnngaggggcgtgtattgtggcacatataatagtagctagc-ggcattgagaatcgaataactgcattacactacaaagctgaggtaa |
307 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54646701 |
tgtttgggtttttttgaggggcgtgtattgtggcacatataatagtagctagctggcattgagaatcgaataactgcattacactacaaagctgaggtaa |
54646800 |
T |
|
| Q |
308 |
attttcaaacctgtagttctatcactttagctgtactttgttctcccttatatagttctaacacgaatattctattgtgaattataacagagggtggaat |
407 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
54646801 |
attttcaaacctgtagttctatcactttagttgtactttgttctcccttatatagttctaacacgaatattctattgtgaattataacagagggtggagt |
54646900 |
T |
|
| Q |
408 |
ttgcatgagttatgttatttgccaaccaacttgtagttgtatataactcccctctccgcttagaaactgtatgattgtaagtat |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54646901 |
ttgcatgagttatgttatttgccaaccaacttgtagttgtatataactcccctctccgcttagaaactgtatgattgtaagtat |
54646984 |
T |
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