View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_low_19 (Length: 495)
Name: NF19615_low_19
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 17 - 485
Target Start/End: Original strand, 26569639 - 26570107
Alignment:
| Q |
17 |
agttttgagatggtgatgccatattccgttttggtctttaggaggaggaggaagagatggtggtttggagataggtaaagttagtgatgagaagtagtaa |
116 |
Q |
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| T |
26569639 |
agttttgagatggtgatgccatattcggttttggtctttaggaggaggaggaagagatggtggtttggagataggtaaagttagtgatgaaaagtagtaa |
26569738 |
T |
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| Q |
117 |
aatacataggtacaaacagatgagtattttcccatttatacgcaccaaatctaaannnnnnnncaacattttgtttgattctcatactgaattgtaatga |
216 |
Q |
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| T |
26569739 |
aatacataggtacaaacagatgagtgttttcccatttatacgcaccaaatctaattttttttctaacattttgtttgattctcatactgaattgtaatga |
26569838 |
T |
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| Q |
217 |
tctacaacaagagtttctaaattggatgggtggtccttgctaatactttttgaggctgtagcatttgatatagcattattagcatctatatatataatgc |
316 |
Q |
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| T |
26569839 |
tctacaacaagagtttctaaattggatgggtggtccttgctaatactttttgaggctgtagcatttgatatagcattattagcatctatatatataatgc |
26569938 |
T |
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| Q |
317 |
aaataactctaattctttgtttgtac-nnnnnnnnntccaattcatcgtgaatatatttttaaaagagttggaggttctaagttctaacccgtacaaaga |
415 |
Q |
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| T |
26569939 |
aaataactctaattctttgtttgtacaaaataaaaatccaattcatagtgaatatatttttaaaagagttggaggttctgagttctaacccgtacaaaga |
26570038 |
T |
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| Q |
416 |
gtaatatattaacctaataaactaactattactcccttcgtcccataataagtgggtttcttttattcat |
485 |
Q |
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| T |
26570039 |
gtaatatattaacctaataaactaactactactcccttcgtctcctaataagtgagttt-ttttattcat |
26570107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 26571417 - 26571476
Alignment:
| Q |
185 |
ttttgtttgattctcatactgaattgtaatgatctacaacaagagtttctaaattggatg |
244 |
Q |
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| T |
26571417 |
ttttgtttgattttcatactaaattataatgatctacgacaagagtttttaaattagatg |
26571476 |
T |
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