View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_low_2 (Length: 862)
Name: NF19615_low_2
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-179; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 338 - 782
Target Start/End: Original strand, 13734369 - 13734813
Alignment:
| Q |
338 |
taaagacaaatataaaattaagtcattgaaatgtgaaaggaaataagatgcataccccatctgttgctaagatgacaaattgatccatagtagtgagttt |
437 |
Q |
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| T |
13734369 |
taaagacaaatataaa-ttaagtcattgaaatgtgaaaggaaataagatgcataccccatctgttgctaagatgacaaattgatccatagtagtgagttt |
13734467 |
T |
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| Q |
438 |
tctttgtgtcacatctggtactgagattagtccaaagtcttttacacaataatcaccaaatgctcttgatattgctagtccaggactcttaccatttggc |
537 |
Q |
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| T |
13734468 |
tctttgtgtcacatctggtactgagattagtccaaagtcttttacacaataatcaccaaatgctcttgatattgctagtcctggactcttaccatttggc |
13734567 |
T |
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| Q |
538 |
atccaaactctatatactcctggttcatcttccatacaaaacactcttccgtttgattccattatgcgctctgcttcatctgaaattaacaagaatcaac |
637 |
Q |
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| T |
13734568 |
atccaaactctatatactcctggttcatcttccatacaaaacactcttccgtttgattccattatgcgctctgcttcatctgaaattaacaagaaacaac |
13734667 |
T |
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| Q |
638 |
actcaaatttcttcaatatcaacacac-atgcttttgtcaggatctgctgccgtaaacaaaagacgcag-tacacatattgtttttatctcggccattac |
735 |
Q |
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| T |
13734668 |
actcaaatttcttcaatatcaacacacgcttcttatgtaaatatctgctgcagtaaacaaaagatgcagttacaagcatt-tcttgatctcgtacgttaa |
13734766 |
T |
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| Q |
736 |
tttgatattggacaattcaaattacgcaataacaaaattagtctaaa |
782 |
Q |
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| T |
13734767 |
tttgatatcggacagttcaaattacacaataaaaaaatcagtctaaa |
13734813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 10 - 283
Target Start/End: Original strand, 13734039 - 13734314
Alignment:
| Q |
10 |
gtacattattcttcttttgtgctatattttggnnnnnnnnncttcctctaaacgatcacatgacctaatgatatgctcac--tctaatatcattccattg |
107 |
Q |
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| T |
13734039 |
gtacattcttcttcttttgtgctatattttggtttattttctttcctgtaaatgatcacatgacctaatgatatgctcacactctaatatcattccattg |
13734138 |
T |
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| Q |
108 |
ccacttaaccaacctagcatgtatattcatcggattgatgtttggaacgatagttagtttgataatatcacgatagaaaatgattttgtcgaaggtccaa |
207 |
Q |
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| T |
13734139 |
ccacttaaccaacctagcatgtatattcatcggattcatgtttggaacgatagttagtttgataatatcacgatagaaaatgattttgtcgaaggtccaa |
13734238 |
T |
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| Q |
208 |
aatgtagcttttgttaaaattacgatgtcacgacatgattctatcaaactcaccatcaatccaaacatgcattgag |
283 |
Q |
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| T |
13734239 |
aatgtagcttttgttaaaattacgatgtcacgacatgattctatcaaactcaccatcaatccaaacatgcattgag |
13734314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 2e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 388 - 650
Target Start/End: Complemental strand, 49918172 - 49917908
Alignment:
| Q |
388 |
cataccccatctgttgctaagatgacaaattgatccatagtagtgagttttctttgtgtcacatctggtactgagattagtccaaagtcttttacacaat |
487 |
Q |
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||||||||||||||||||||||||| |||||||||| ||| || |||||||| |||||||||||||| ||||||||||| ||| |||| || | ||||| |
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| T |
49918172 |
cataccccatctgttgctaagatgataaattgatccccagtggtaagttttctatgtgtcacatctggcactgagattagaccatagtccttcatacaat |
49918073 |
T |
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| Q |
488 |
aatcaccaaatgctcttgatattgctagtccaggactcttaccatttggcatccaaactctatatactcctggttcatcttccatacaaaacactcttcc |
587 |
Q |
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| T |
49918072 |
agtcaccaaaggctctagatattgctaatcctggtgttttaccatttggcatccacaccctatacactcctggttcatctttcatacaaaatacacgtcc |
49917973 |
T |
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| Q |
588 |
gtttgattccattatgcgctctgcttcatctgaaattaacaagaat--caacactcaaatttctt |
650 |
Q |
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| T |
49917972 |
ttttgattcttttatgcgttctgcctcatctgaaatcaacaaatattacaacactcaaatttctt |
49917908 |
T |
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