View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19615_low_22 (Length: 471)
Name: NF19615_low_22
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 107 - 455
Target Start/End: Complemental strand, 41704840 - 41704492
Alignment:
| Q |
107 |
tttgacctaatcaatatgtatgtctcaacttatgtcatatttgtttttcaatggtttcgtcaaacgcacacccatgtaatcaccatctcaatcataaatg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
41704840 |
tttgacctaatcaatatgtatgtctcaacttatgtcatatttgtttttcaatggtttcatcaaatggacacccatgtaatcaccatctcaatcataaatg |
41704741 |
T |
|
| Q |
207 |
aagattgtgaacttctagagaacatcgtcaattttcgatagaatatctgatattttttaagcagtgatgcatcatggaccacttgataagtaattcactt |
306 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41704740 |
aagattgtgaacttctaaagaacatcgtcaattttcgatagaatatctgatattttttaagcagtgatgcatcatggaccacttgataagtaattcactt |
41704641 |
T |
|
| Q |
307 |
gttaaagggaccccaaaggttaattgtttctgaagaaacaaagtacaaaacattgtacactgaaccgcaacctagtggacgggactctagtccttccaat |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41704640 |
gttaaagggaccccaaaggttaattgtttctgaagaaacaaagtacaaaacattttacactgaaccgcaacctagtggacgggactctagtccttccaat |
41704541 |
T |
|
| Q |
407 |
tagtatgtctcgtaaggttctgtatatagttattcttttctaaactttt |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41704540 |
tagtatgtctcgtaaggttctgtatatagttattcttttctaaactttt |
41704492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 41704937 - 41704885
Alignment:
| Q |
23 |
aataccataagtttagattaaaagattgcataaataatttgtttgagatttttg |
76 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||||| || ||||| |
|
|
| T |
41704937 |
aataccataagtttagattaaaagattacataaa-aatttgtttgggacttttg |
41704885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University